Literature DB >> 17999951

Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics.

Grant R Bigg1, Clifford W Cunningham, Geir Ottersen, Grant H Pogson, Martin R Wadley, Phillip Williamson.   

Abstract

Scant scientific attention has been given to the abundance and distribution of marine biota in the face of the lower sea level, and steeper latitudinal gradient in climate, during the ice-age conditions that have dominated the past million years. Here we examine the glacial persistence of Atlantic cod (Gadus morhua) populations using two ecological-niche-models (ENM) and the first broad synthesis of multi-locus gene sequence data for this species. One ENM uses a maximum entropy approach (<span style='font-size:xx-small;'>Maxent</span> ); the other is a new ENM for Atlantic cod, using ecophysiological parameters based on observed reproductive events rather than adult distribution. Both the ENMs were tested for present-day conditions, then used to hindcast ranges at the last glacial maximum (LGM) ca 21kyr ago, employing climate model data. Although the LGM range of Atlantic cod was much smaller, and fragmented, both the ENMs agreed that populations should have been able to persist in suitable habitat on both sides of the Atlantic. The genetic results showed a degree of trans-Atlantic divergence consistent with genealogically continuous populations on both sides of the North Atlantic since long before the LGM, confirming the ENM results. In contrast, both the ENMs and the genetic data suggest that the Greenland G. morhua population post-dates the LGM.

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Year:  2008        PMID: 17999951      PMCID: PMC2596182          DOI: 10.1098/rspb.2007.1153

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  22 in total

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Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

2.  Phylogeography and historical ecology of the North Atlantic intertidal.

Authors:  J P Wares; C W Cunningham
Journal:  Evolution       Date:  2001-12       Impact factor: 3.694

3.  Distinguishing migration from isolation: a Markov chain Monte Carlo approach.

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4.  Extinction risk from climate change.

Authors:  Chris D Thomas; Alison Cameron; Rhys E Green; Michel Bakkenes; Linda J Beaumont; Yvonne C Collingham; Barend F N Erasmus; Marinez Ferreira De Siqueira; Alan Grainger; Lee Hannah; Lesley Hughes; Brian Huntley; Albert S Van Jaarsveld; Guy F Midgley; Lera Miles; Miguel A Ortega-Huerta; A Townsend Peterson; Oliver L Phillips; Stephen E Williams
Journal:  Nature       Date:  2004-01-08       Impact factor: 49.962

5.  Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis.

Authors:  Jody Hey; Rasmus Nielsen
Journal:  Genetics       Date:  2004-06       Impact factor: 4.562

6.  Differential patterns of male and female mtDNA exchange across the Atlantic Ocean in the blue mussel, Mytilus edulis.

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7.  Holarctic phylogeography of Arctic charr (Salvelinus alpinus L.) inferred from mitochondrial DNA sequences.

Authors:  P C Brunner; M R Douglas; A Osinov; C C Wilson; L Bernatchez
Journal:  Evolution       Date:  2001-03       Impact factor: 3.694

8.  Nucleotide polymorphism and natural selection at the pantophysin (Pan I) locus in the Atlantic cod, Gadus morhua (L.).

Authors:  G H Pogson
Journal:  Genetics       Date:  2001-01       Impact factor: 4.562

9.  Positive Darwinian selection at the pantophysin (Pan I) locus in marine gadid fishes.

Authors:  Grant H Pogson; Kathryn A Mesa
Journal:  Mol Biol Evol       Date:  2003-08-29       Impact factor: 16.240

10.  Mitochondrial cytochrome B DNA variation in the high-fecundity atlantic cod: trans-atlantic clines and shallow gene genealogy.

Authors:  Einar Arnason
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

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  24 in total

1.  Unique genetic variation at a species' rear edge is under threat from global climate change.

Authors:  Jim Provan; Christine A Maggs
Journal:  Proc Biol Sci       Date:  2011-05-18       Impact factor: 5.349

2.  Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature.

Authors:  Ian R Bradbury; Sophie Hubert; Brent Higgins; Tudor Borza; Sharen Bowman; Ian G Paterson; Paul V R Snelgrove; Corey J Morris; Robert S Gregory; David C Hardie; Jeffrey A Hutchings; Daniel E Ruzzante; Chris T Taggart; Paul Bentzen
Journal:  Proc Biol Sci       Date:  2010-06-30       Impact factor: 5.349

3.  Phylogeographic analysis reveals a deep lineage split within North Atlantic Littorina saxatilis.

Authors:  Meredith M Doellman; Geoffrey C Trussell; John W Grahame; Steve V Vollmer
Journal:  Proc Biol Sci       Date:  2011-03-23       Impact factor: 5.349

4.  High dispersal potential has maintained long-term population stability in the North Atlantic copepod Calanus finmarchicus.

Authors:  Jim Provan; Gemma E Beatty; Sianan L Keating; Christine A Maggs; Graham Savidge
Journal:  Proc Biol Sci       Date:  2009-01-22       Impact factor: 5.349

5.  Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation.

Authors:  Ryan C Garrick; Paul Sunnucks; Rodney J Dyer
Journal:  BMC Evol Biol       Date:  2010-04-30       Impact factor: 3.260

6.  Intraspecific phylogeographic genomics from multiple complete mtDNA genomes in Atlantic cod (Gadus morhua): origins of the "codmother," transatlantic vicariance and midglacial population expansion.

Authors:  Steven M Carr; H Dawn Marshall
Journal:  Genetics       Date:  2008-08-20       Impact factor: 4.562

7.  Genetic hypervariability of a Northeastern Atlantic venomous rockfish.

Authors:  Sara M Francisco; Rita Castilho; Cristina S Lima; Frederico Almada; Francisca Rodrigues; Radek Šanda; Jasna Vukić; Anna Maria Pappalardo; Venera Ferrito; Joana I Robalo
Journal:  PeerJ       Date:  2021-07-12       Impact factor: 2.984

8.  Effects of late-cenozoic glaciation on habitat availability in Antarctic benthic shrimps (Crustacea: Decapoda: Caridea).

Authors:  Johannes Dambach; Sven Thatje; Dennis Rödder; Zeenatul Basher; Michael J Raupach
Journal:  PLoS One       Date:  2012-09-27       Impact factor: 3.240

9.  Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua).

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Journal:  BMC Evol Biol       Date:  2009-12-01       Impact factor: 3.260

10.  Phylogeography of amphi-boreal fish: tracing the history of the Pacific herring Clupea pallasii in North-East European seas.

Authors:  Hanna M Laakkonen; Dmitry L Lajus; Petr Strelkov; Risto Väinölä
Journal:  BMC Evol Biol       Date:  2013-03-19       Impact factor: 3.260

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