Literature DB >> 17999482

Stochastic actions for diffusive dynamics: reweighting, sampling, and minimization.

Artur B Adib1.   

Abstract

In numerical studies of diffusive dynamics, two different action functionals are often used to specify the probability distribution of trajectories, one of which requires the evaluation of the second derivative of the potential in addition to the force. Here it is argued that both actions are equivalent prescriptions for the purposes of reweighting and sampling trajectories, whereas the most probable path is more generally given by the global minimum of the action involving the second derivative term. The answer to this apparent paradox lies in the nondifferentiable character of Brownian paths, as well as in the "entropy" associated with a given trajectory.

Mesh:

Year:  2007        PMID: 17999482     DOI: 10.1021/jp0751458

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

1.  Path integral analysis of Jarzynski's equality: analytical results.

Authors:  David D L Minh; Artur B Adib
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-02-18

2.  Milestoning with wind: Exploring the impact of a biasing potential in exact calculation of kinetics.

Authors:  Hao Wang; Ron Elber
Journal:  J Chem Phys       Date:  2020-06-14       Impact factor: 3.488

3.  Variational methods for time-dependent classical many-particle systems.

Authors:  Yuriy V Sereda; Peter J Ortoleva
Journal:  Physica A       Date:  2013-02-15       Impact factor: 3.263

4.  Finding multiple reaction pathways via global optimization of action.

Authors:  Juyong Lee; In-Ho Lee; InSuk Joung; Jooyoung Lee; Bernard R Brooks
Journal:  Nat Commun       Date:  2017-05-26       Impact factor: 14.919

Review 5.  The role of non-native interactions in the folding of knotted proteins: insights from molecular dynamics simulations.

Authors:  Roberto Covino; Tatjana Skrbić; Silvio A Beccara; Pietro Faccioli; Cristian Micheletti
Journal:  Biomolecules       Date:  2013-12-24
  5 in total

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