Literature DB >> 17995075

Attractors in continuous and Boolean networks.

Johannes Norrell1, Björn Samuelsson, Joshua E S Socolar.   

Abstract

We study the stable attractors of a class of continuous dynamical systems that may be idealized as networks of Boolean elements, with the goal of determining which Boolean attractors, if any, are good approximations of the attractors of generic continuous systems. We investigate the dynamics in simple rings and rings with one additional self-input. An analysis of switching characteristics and pulse propagation explains the relation between attractors of the continuous systems and their Boolean approximations. For simple rings, "reliable" Boolean attractors correspond to stable continuous attractors. For networks with more complex logic, the qualitative features of continuous attractors are influenced by inherently non-Boolean characteristics of switching events.

Year:  2007        PMID: 17995075     DOI: 10.1103/PhysRevE.76.046122

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

1.  Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.

Authors:  Mengyang Sun; Xianrui Cheng; Joshua E S Socolar
Journal:  Chaos       Date:  2013-06       Impact factor: 3.642

2.  Boolean modeling of collective effects in complex networks.

Authors:  Johannes Norrell; Joshua E S Socolar
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-06-08

3.  Boolean versus continuous dynamics in modules with two feedback loops.

Authors:  Eva Ackermann; Eva Marie Weiel; Torsten Pfaff; Barbara Drossel
Journal:  Eur Phys J E Soft Matter       Date:  2012-10-26       Impact factor: 1.890

4.  Reliability of transcriptional cycles and the yeast cell-cycle oscillator.

Authors:  Volkan Sevim; Xinwei Gong; Joshua E S Socolar
Journal:  PLoS Comput Biol       Date:  2010-07-08       Impact factor: 4.475

  4 in total

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