Literature DB >> 1799404

Nonuniform size distribution of nascent globin peptides, evidence for pause localization sites, and a contranslational protein-folding model.

I A Krasheninnikov1, A A Komar, I A Adzhubei.   

Abstract

Examination of nascent globin peptides accumulating in vitro during globin synthesis in rabbit reticulocyte lysates was carried out. A view was supported that nonrandom distribution of codons with different usage frequencies in mRNA may determine the messenger's translation kinetics. Regions of reduced translation of alpha- and beta-globin polypeptide chains were localized, and the cotranslational protein-folding model suggested previously was substantiated. An active conjunction of synthesis and folding of proteins was proposed as one of the main destinations of a translation nonuniformity.

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Year:  1991        PMID: 1799404     DOI: 10.1007/BF01025472

Source DB:  PubMed          Journal:  J Protein Chem        ISSN: 0277-8033


  42 in total

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Journal:  Science       Date:  1975-11-07       Impact factor: 47.728

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Journal:  Arch Biochem Biophys       Date:  1979-04-15       Impact factor: 4.013

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Journal:  J Biol Chem       Date:  1973-03-10       Impact factor: 5.157

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Authors:  H R Pelham; R J Jackson
Journal:  Eur J Biochem       Date:  1976-08-01

7.  Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.

Authors:  T Ikemura
Journal:  J Mol Biol       Date:  1982-07-15       Impact factor: 5.469

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Authors:  V I Lim
Journal:  FEBS Lett       Date:  1978-05-01       Impact factor: 4.124

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Authors:  L K Thomas; D B Dix; R C Thompson
Journal:  Proc Natl Acad Sci U S A       Date:  1988-06       Impact factor: 11.205

Review 10.  Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes.

Authors:  H Grosjean; W Fiers
Journal:  Gene       Date:  1982-06       Impact factor: 3.688

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  11 in total

1.  Large-scale analysis of conserved rare codon clusters suggests an involvement in co-translational molecular recognition events.

Authors:  Matthieu Chartier; Francis Gaudreault; Rafael Najmanovich
Journal:  Bioinformatics       Date:  2012-03-30       Impact factor: 6.937

2.  Isolation of ribosome bound nascent polypeptides in vitro to identify translational pause sites along mRNA.

Authors:  Sujata S Jha; Anton A Komar
Journal:  J Vis Exp       Date:  2012-07-06       Impact factor: 1.355

Review 3.  The effects of codon bias and optimality on mRNA and protein regulation.

Authors:  Fabian Hia; Osamu Takeuchi
Journal:  Cell Mol Life Sci       Date:  2020-10-30       Impact factor: 9.261

4.  The signal recognition particle receptor alpha subunit assembles co-translationally on the endoplasmic reticulum membrane during an mRNA-encoded translation pause in vitro.

Authors:  J C Young; D W Andrews
Journal:  EMBO J       Date:  1996-01-02       Impact factor: 11.598

5.  An Integrated Sequence-Structure Database incorporating matching mRNA sequence, amino acid sequence and protein three-dimensional structure data.

Authors:  I A Adzhubei; A A Adzhubei; S Neidle
Journal:  Nucleic Acids Res       Date:  1998-01-01       Impact factor: 16.971

6.  Synonymous codon usage influences the local protein structure observed.

Authors:  Rhodri Saunders; Charlotte M Deane
Journal:  Nucleic Acids Res       Date:  2010-06-08       Impact factor: 16.971

Review 7.  Birth, life and death of nascent polypeptide chains.

Authors:  Sujata Jha; Anton A Komar
Journal:  Biotechnol J       Date:  2011-04-29       Impact factor: 4.677

8.  Mapping codon usage of the translation initiation region in porcine reproductive and respiratory syndrome virus genome.

Authors:  Jun-hong Su; Xiao-xia Ma; Ya-li He; Ji-dong Li; Xu-sheng Ma; Yong-xi Dou; Xue-nong Luo; Xue-peng Cai
Journal:  Virol J       Date:  2011-10-21       Impact factor: 4.099

9.  Clustering of codons with rare cognate tRNAs in human genes suggests an extra level of expression regulation.

Authors:  Joanna L Parmley; Martijn A Huynen
Journal:  PLoS Genet       Date:  2009-07-03       Impact factor: 5.917

Review 10.  Co-translational mechanisms of quality control of newly synthesized polypeptides.

Authors:  Valentina Gandin; Ivan Topisirovic
Journal:  Translation (Austin)       Date:  2014-02-13
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