Literature DB >> 17993684

Discovery of motifs in promoters of coregulated genes.

Olivier Sand1, Jacques van Helden.   

Abstract

We present a method to predict cis-acting elements by detecting over-represented motifs in promoters of a set of coregulated genes (single-genome, multigenes approach). The method has been used successfully to detect regulating elements in bacteria and yeast. It can be used with higher organisms as well, but with a loss in reliability of the predictions. A web interface is available at the Regulatory Sequence Analysis Tools site (http://rsat.scmbb.ulb.ac.be/rsat/).

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Year:  2007        PMID： 17993684     DOI： 10.1007/978-1-59745-514-5_21

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  3 in total

1.  RSAT 2011: regulatory sequence analysis tools.

Authors:  Morgane Thomas-Chollier; Matthieu Defrance; Alejandra Medina-Rivera; Olivier Sand; Carl Herrmann; Denis Thieffry; Jacques van Helden
Journal:  Nucleic Acids Res       Date:  2011-07       Impact factor: 16.971

2.  RSAT 2015: Regulatory Sequence Analysis Tools.

Authors:  Alejandra Medina-Rivera; Matthieu Defrance; Olivier Sand; Carl Herrmann; Jaime A Castro-Mondragon; Jeremy Delerce; Sébastien Jaeger; Christophe Blanchet; Pierre Vincens; Christophe Caron; Daniel M Staines; Bruno Contreras-Moreira; Marie Artufel; Lucie Charbonnier-Khamvongsa; Céline Hernandez; Denis Thieffry; Morgane Thomas-Chollier; Jacques van Helden
Journal:  Nucleic Acids Res       Date:  2015-04-22       Impact factor: 16.971

3.  RSAT: regulatory sequence analysis tools.

Authors:  Morgane Thomas-Chollier; Olivier Sand; Jean-Valéry Turatsinze; Rekin's Janky; Matthieu Defrance; Eric Vervisch; Sylvain Brohée; Jacques van Helden
Journal:  Nucleic Acids Res       Date:  2008-05-21       Impact factor: 16.971
  3 in total

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