Literature DB >> 17993553

Characterization of two new genes, amoR and amoD, in the amo operon of the marine ammonia oxidizer Nitrosococcus oceani ATCC 19707.

Amal F El Sheikh1, Amisha T Poret-Peterson, Martin G Klotz.   

Abstract

Molecular analysis of the amo gene cluster in Nitrosococcus oceani revealed that it consists of five genes, instead of the three known genes, amoCAB. The two additional genes, orf1 and orf5, were introduced as amoR and amoD, respectively. Putative functions of the AmoR and AmoD proteins are discussed.

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Year:  2007        PMID： 17993553      PMCID： PMC2223232          DOI： 10.1128/AEM.01654-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

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Authors:  S Whelan; N Goldman
Journal:  Mol Biol Evol       Date:  2001-05       Impact factor: 16.240

2.  A combined transmembrane topology and signal peptide prediction method.

Authors:  Lukas Käll; Anders Krogh; Erik L L Sonnhammer
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Review 3.  Nitrifier genomics and evolution of the nitrogen cycle.

Authors:  Martin G Klotz; Lisa Y Stein
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4.  Expert system for predicting protein localization sites in gram-negative bacteria.

Authors:  K Nakai; M Kanehisa
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5.  Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria.

Authors:  Jeanette M Norton; J Javier Alzerreca; Yuichi Suwa; Martin G Klotz
Journal:  Arch Microbiol       Date:  2001-12-06       Impact factor: 2.552

6.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

7.  The amo operon in marine, ammonia-oxidizing gamma-proteobacteria.

Authors:  J J Alzerreca; J M Norton; M G Klotz
Journal:  FEMS Microbiol Lett       Date:  1999-11-01       Impact factor: 2.742

8.  A gene encoding a membrane protein exists upstream of the amoA/amoB genes in ammonia oxidizing bacteria: a third member of the amo operon?

Authors:  M G Klotz; J Alzerreca; J M Norton
Journal:  FEMS Microbiol Lett       Date:  1997-05-01       Impact factor: 2.742

9.  Complete genome sequence of the ammonia-oxidizing bacterium and obligate chemolithoautotroph Nitrosomonas europaea.

Authors:  Patrick Chain; Jane Lamerdin; Frank Larimer; Warren Regala; Victoria Lao; Miriam Land; Loren Hauser; Alan Hooper; Martin Klotz; Jeanette Norton; Luis Sayavedra-Soto; Dave Arciero; Norman Hommes; Mark Whittaker; Daniel Arp
Journal:  J Bacteriol       Date:  2003-05       Impact factor: 3.490

Review 10.  Molecular biology and biochemistry of ammonia oxidation by Nitrosomonas europaea.

Authors:  Daniel J Arp; Luis A Sayavedra-Soto; Norman G Hommes
Journal:  Arch Microbiol       Date:  2002-06-27       Impact factor: 2.552
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  14 in total

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Journal:  Biochemistry       Date:  2016-04-06       Impact factor: 3.162

2.  Copper-responsive gene expression in the methanotroph Methylosinus trichosporium OB3b.

Authors:  Grace E Kenney; Monica Sadek; Amy C Rosenzweig
Journal:  Metallomics       Date:  2016-04-18       Impact factor: 4.526

3.  The divergent AmoC3 subunit of ammonia monooxygenase functions as part of a stress response system in Nitrosomonas europaea.

Authors:  Paul M Berube; David A Stahl
Journal:  J Bacteriol       Date:  2012-04-27       Impact factor: 3.490

4.  Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment.

Authors:  Jeanette M Norton; Martin G Klotz; Lisa Y Stein; Daniel J Arp; Peter J Bottomley; Patrick S G Chain; Loren J Hauser; Miriam L Land; Frank W Larimer; Maria W Shin; Shawn R Starkenburg
Journal:  Appl Environ Microbiol       Date:  2008-04-04       Impact factor: 4.792

5.  Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations.

Authors:  Annette Bollmann; Christopher J Sedlacek; Jeanette Norton; Hendrikus J Laanbroek; Yuichi Suwa; Lisa Y Stein; Martin G Klotz; Daniel Arp; Luis Sayavedra-Soto; Megan Lu; David Bruce; Chris Detter; Roxanne Tapia; James Han; Tanja Woyke; Susan M Lucas; Sam Pitluck; Len Pennacchio; Matt Nolan; Miriam L Land; Marcel Huntemann; Shweta Deshpande; Cliff Han; Amy Chen; Nikos Kyrpides; Konstantinos Mavromatis; Victor Markowitz; Ernest Szeto; Natalia Ivanova; Natalia Mikhailova; Ioanna Pagani; Amrita Pati; Lin Peters; Galina Ovchinnikova; Lynne A Goodwin
Journal:  Stand Genomic Sci       Date:  2013-02-25

6.  Characterization of a long overlooked copper protein from methane- and ammonia-oxidizing bacteria.

Authors:  Oriana S Fisher; Grace E Kenney; Matthew O Ross; Soo Y Ro; Betelehem E Lemma; Sharon Batelu; Paul M Thomas; Victoria C Sosnowski; Caroline J DeHart; Neil L Kelleher; Timothy L Stemmler; Brian M Hoffman; Amy C Rosenzweig
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Review 7.  Phylogenetic and functional marker genes to study ammonia-oxidizing microorganisms (AOM) in the environment.

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8.  Energy-mediated vs. ammonium-regulated gene expression in the obligate ammonia-oxidizing bacterium, Nitrosococcus oceani.

Authors:  Lisa Y Stein; Mark A Campbell; Martin G Klotz
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9.  Complete nitrification by a single microorganism.

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Journal:  Nature       Date:  2015-11-26       Impact factor: 49.962

10.  Transcriptome Analysis of the Ammonia-Oxidizing Bacterium Nitrosomonas mobilis Ms1 Reveals Division of Labor between Aggregates and Free-living Cells.

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