Literature DB >> 17990979

Deactivation of Src family kinases: hypothesis testing using a Monte Carlo sensitivity analysis of systems-level properties.

Hendrik Fuss1, Werner Dubitzky, C Stephen Downes, Mary Jo Kurth.   

Abstract

Src family tyrosine kinases play a key role in many cellular signalling networks, but due to the high complexity of these networks their precise function remains elusive. Many factors involved in Src regulation, such as specific kinases and phosphatases, are still unknown. Mathematical models have been constructed to improve the understanding of the system and its dynamic behavior. Using a computational random parameter search, we characterized and compared the dynamics of three alternative models in order to assess their likelihoods. For this, we investigated how systems-level properties such as bistability and excitable behavior relate to kinetic and physiological parameters and how robust these properties were. Our results suggest the existence of a putative negative feedback loop in the Src system. A previously suggested role for PTPalpha in the deactivation of Src was not supported by the model.

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Year:  2007        PMID: 17990979     DOI: 10.1089/cmb.2007.0095

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  6 in total

1.  SRC family kinases and receptors: analysis of three activation mechanisms by dynamic systems modeling.

Authors:  Hendrik Fuss; Werner Dubitzky; C Stephen Downes; Mary Jo Kurth
Journal:  Biophys J       Date:  2007-11-30       Impact factor: 4.033

2.  A computational model for early events in B cell antigen receptor signaling: analysis of the roles of Lyn and Fyn.

Authors:  Dipak Barua; William S Hlavacek; Tomasz Lipniacki
Journal:  J Immunol       Date:  2012-06-18       Impact factor: 5.422

3.  Toggle switches, pulses and oscillations are intrinsic properties of the Src activation/deactivation cycle.

Authors:  Nikolai P Kaimachnikov; Boris N Kholodenko
Journal:  FEBS J       Date:  2009-08       Impact factor: 5.542

4.  B cell activation triggered by the formation of the small receptor cluster: a computational study.

Authors:  Beata Hat; Bogdan Kazmierczak; Tomasz Lipniacki
Journal:  PLoS Comput Biol       Date:  2011-10-06       Impact factor: 4.475

5.  Tyrosine phosphorylation of Rac1: a role in regulation of cell spreading.

Authors:  Fumin Chang; Christopher Lemmon; Daniel Lietha; Michael Eck; Lewis Romer
Journal:  PLoS One       Date:  2011-12-06       Impact factor: 3.240

6.  Roles of raft-anchored adaptor Cbp/PAG1 in spatial regulation of c-Src kinase.

Authors:  Takashi Saitou; Kentaro Kajiwara; Chitose Oneyama; Takashi Suzuki; Masato Okada
Journal:  PLoS One       Date:  2014-03-27       Impact factor: 3.240

  6 in total

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