Literature DB >> 17990888

Essential role of an active-site guanine in glmS ribozyme catalysis.

Daniel J Klein1, Michael D Been, Adrian R Ferré-D'Amaré.   

Abstract

The glmS ribozyme is a catalytic riboswitch that is activated for endonucleolytic cleavage by the coenzyme glucosamine-6-phosphate. Using kinetic assays and X-ray crystallography, we identify an active-site mutation of a conserved guanine that abolishes catalysis without perturbing coenzyme binding. Our results provide evidence that coenzyme function requires a specific nucleobase to interact with the nucleophile of the cleavage reaction.

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Year:  2007        PMID: 17990888     DOI: 10.1021/ja0768441

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  50 in total

Review 1.  Riboswitch function: flipping the switch or tuning the dimmer?

Authors:  Nathan J Baird; Nadia Kulshina; Adrian R Ferré-D'Amaré
Journal:  RNA Biol       Date:  2010-05-30       Impact factor: 4.652

2.  Protonation states of the key active site residues and structural dynamics of the glmS riboswitch as revealed by molecular dynamics.

Authors:  Pavel Banás; Nils G Walter; Jirí Sponer; Michal Otyepka
Journal:  J Phys Chem B       Date:  2010-07-08       Impact factor: 2.991

3.  An active-site guanine participates in glmS ribozyme catalysis in its protonated state.

Authors:  Júlia Viladoms; Lincoln G Scott; Martha J Fedor
Journal:  J Am Chem Soc       Date:  2011-10-20       Impact factor: 15.419

4.  Use of a coenzyme by the glmS ribozyme-riboswitch suggests primordial expansion of RNA chemistry by small molecules.

Authors:  Adrian R Ferré-D'Amaré
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-10-27       Impact factor: 6.237

5.  Multiscale methods for computational RNA enzymology.

Authors:  Maria T Panteva; Thakshila Dissanayake; Haoyuan Chen; Brian K Radak; Erich R Kuechler; George M Giambaşu; Tai-Sung Lee; Darrin M York
Journal:  Methods Enzymol       Date:  2015-01-22       Impact factor: 1.600

6.  Mechanism and distribution of glmS ribozymes.

Authors:  Phillip J McCown; Wade C Winkler; Ronald R Breaker
Journal:  Methods Mol Biol       Date:  2012

7.  Deciphering the role of glucosamine-6-phosphate in the riboswitch action of glmS ribozyme.

Authors:  Yao Xin; Donald Hamelberg
Journal:  RNA       Date:  2010-10-22       Impact factor: 4.942

8.  The ionic environment determines ribozyme cleavage rate by modulation of nucleobase pK a.

Authors:  M Duane Smith; Reza Mehdizadeh; Joan E Olive; Richard A Collins
Journal:  RNA       Date:  2008-08-12       Impact factor: 4.942

9.  An in vitro evolved glmS ribozyme has the wild-type fold but loses coenzyme dependence.

Authors:  Matthew W L Lau; Adrian R Ferré-D'Amaré
Journal:  Nat Chem Biol       Date:  2013-10-06       Impact factor: 15.040

10.  Recognition of the bacterial second messenger cyclic diguanylate by its cognate riboswitch.

Authors:  Nadia Kulshina; Nathan J Baird; Adrian R Ferré-D'Amaré
Journal:  Nat Struct Mol Biol       Date:  2009-11-08       Impact factor: 15.369

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