Literature DB >> 17990497

A stacked graphical model for associating sub-images with sub-captions.

Zhenzhen Kou1, William W Cohen, Robert F Murphy.   

Abstract

There is extensive interest in mining data from full text. We have built a system called SLIF (for Subcellular Location Image Finder), which extracts information on one particular aspect of biology from a combination of text and images in journal articles. Associating the information from the text and image requires matching sub-figures with the sentences in the text. We introduce a stacked graphical model, a meta-learning scheme to augment a base learner by expanding features based on related instances, to match the labels of sub-figures with labels of sentences. The experimental results show a significant improvement in the matching accuracy of the stacked graphical model (81.3%) as compared with a relational dependency network (70.8%) or the current algorithm in SLIF (64.3%).

Mesh:

Year:  2007        PMID: 17990497      PMCID: PMC2853925     

Source DB:  PubMed          Journal:  Pac Symp Biocomput        ISSN: 2335-6928


  4 in total

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Journal:  Pac Symp Biocomput       Date:  2002

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Journal:  Bioinformatics       Date:  2005-06       Impact factor: 6.937

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Authors:  Ryan McDonald; Fernando Pereira
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

  4 in total
  6 in total

1.  Mining and integration of pathway diagrams from imaging data.

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Journal:  Bioinformatics       Date:  2012-01-20       Impact factor: 6.937

Review 2.  Frontiers of biomedical text mining: current progress.

Authors:  Pierre Zweigenbaum; Dina Demner-Fushman; Hong Yu; Kevin B Cohen
Journal:  Brief Bioinform       Date:  2007-10-30       Impact factor: 11.622

3.  Structured Literature Image Finder: Parsing Text and Figures in Biomedical Literature.

Authors:  Amr Ahmed; Andrew Arnold; Luis Pedro Coelho; Joshua Kangas; Abdul-Saboor Sheikh; Eric Xing; William Cohen; Robert F Murphy
Journal:  Web Semant       Date:  2010-07-01       Impact factor: 1.897

4.  Automatic figure ranking and user interfacing for intelligent figure search.

Authors:  Hong Yu; Feifan Liu; Balaji Polepalli Ramesh
Journal:  PLoS One       Date:  2010-10-07       Impact factor: 3.240

Review 5.  Mining biomedical images towards valuable information retrieval in biomedical and life sciences.

Authors:  Zeeshan Ahmed; Saman Zeeshan; Thomas Dandekar
Journal:  Database (Oxford)       Date:  2016-08-18       Impact factor: 3.451

6.  Is searching full text more effective than searching abstracts?

Authors:  Jimmy Lin
Journal:  BMC Bioinformatics       Date:  2009-02-03       Impact factor: 3.169

  6 in total

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