Literature DB >> 17990323

The use of bead beating to prepare suspensions of nuclei for flow cytometry from fresh leaves, herbarium leaves, petals and pollen.

Andy V Roberts1.   

Abstract

"Bead beating" is commonly used to release DNA from cells for genomic studies but it was used here to prepare suspensions of plant nuclei for measurement of DNA amounts by flow cytometry. Plant material was placed in 2-ml screw-capped tubes containing beads of zirconia/silica (2.5 mm diameter) or glass (2.5 or 1.0 mm diameter) and 1 ml of lysis buffer. The tubes were mechanically shaken with an FP120 FastPrep Cell Disrupter to release intact nuclei from plant tissue by the impact of the beads. The nuclei were then stained with propidium iodide (PI) and analyzed by flow cytometry. The method was tested using fresh leaves, fresh petals and herbarium leaves of Rosa canina, leaves and pollen of R. rugosa, and fresh leaves of Petroselinum crispum, Nicotiana tabacum, and Allium cepa. Batches of 12 samples of fresh leaves were prepared, simultaneously, in 45 s by bead beating in the Cell Disrupter. In flow cytometry histograms, nuclei of fresh leaves gave G(1)/G(0) peaks with CVs of less than 3.0% and nuclei from fresh petals and herbarium leaves of R. canina, and pollen of the generative nuclei of R. rugosa gave peaks with coefficients of variation (CVs) of less than 4.0%. DNA amounts estimated from 24-month-old herbarium leaves, using P. crispum as an internal standard, were less than those of fresh leaves by a small but significant amount. Suspensions of nuclei can be prepared rapidly and conveniently from a diversity of tissues by bead beating. Exposure of laboratory workers to harmful substances in the lysis buffer is minimized. (c) 2007 International Society for Analytical Cytology

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17990323     DOI: 10.1002/cyto.a.20486

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  10 in total

1.  DNA amounts of roses (Rosa L.) and their use in attributing ploidy levels.

Authors:  A V Roberts; Th Gladis; H Brumme
Journal:  Plant Cell Rep       Date:  2008-10-07       Impact factor: 4.570

2.  Using flow cytometry to estimate pollen DNA content: improved methodology and applications.

Authors:  Paul Kron; Brian C Husband
Journal:  Ann Bot       Date:  2012-08-07       Impact factor: 4.357

3.  The fate of chromosomes and alleles in an allohexaploid Brassica population.

Authors:  Annaliese S Mason; Matthew N Nelson; Junko Takahira; Wallace A Cowling; Gustavo Moreira Alves; Arkaprava Chaudhuri; Ning Chen; Mohana E Ragu; Jessica Dalton-Morgan; Olivier Coriton; Virginie Huteau; Frédérique Eber; Anne-Marie Chèvre; Jacqueline Batley
Journal:  Genetics       Date:  2014-02-20       Impact factor: 4.562

4.  Analysis of Ploidy in Haploids and Doubled Haploids.

Authors:  Sergio J Ochatt; Jose M Seguí-Simarro
Journal:  Methods Mol Biol       Date:  2021

5.  A Target Capture-Based Method to Estimate Ploidy From Herbarium Specimens.

Authors:  Juan Viruel; María Conejero; Oriane Hidalgo; Lisa Pokorny; Robyn F Powell; Félix Forest; Michael B Kantar; Marybel Soto Gomez; Sean W Graham; Barbara Gravendeel; Paul Wilkin; Ilia J Leitch
Journal:  Front Plant Sci       Date:  2019-07-24       Impact factor: 5.753

6.  Characterization of Rosa canina Fruits Collected in Urban Areas of Slovakia. Genome Size, iPBS Profiles and Antioxidant and Antimicrobial Activities.

Authors:  Katarína Rovná; Eva Ivanišová; Jana Žiarovská; Peter Ferus; Margarita Terentjeva; Przemysław Łukasz Kowalczewski; Miroslava Kačániová
Journal:  Molecules       Date:  2020-04-19       Impact factor: 4.411

7.  A dormant resource for genome size estimation in ferns: C-value inference of the Ophioglossaceae using herbarium specimen spores.

Authors:  Li-Yaung Kuo; Sheng Kai Tang; Tzu-Tong Kao; Atsushi Ebihara; Susan Fawcett; Min-Chien Hsiao; Wataru Shinohara; Benjamin Dauphin
Journal:  Appl Plant Sci       Date:  2021-12-07       Impact factor: 1.936

8.  Genome Size Variation and Evolution Driven by Transposable Elements in the Genus Oryza.

Authors:  Shuang-Feng Dai; Xun-Ge Zhu; Ge-Rang Hutang; Jia-Yue Li; Jia-Qi Tian; Xian-Hui Jiang; Dan Zhang; Li-Zhi Gao
Journal:  Front Plant Sci       Date:  2022-07-07       Impact factor: 6.627

9.  Multiple photosynthetic transitions, polyploidy, and lateral gene transfer in the grass subtribe Neurachninae.

Authors:  Pascal-Antoine Christin; Mark J Wallace; Harmony Clayton; Erika J Edwards; Robert T Furbank; Paul W Hattersley; Rowan F Sage; Terry D Macfarlane; Martha Ludwig
Journal:  J Exp Bot       Date:  2012-10-17       Impact factor: 6.992

10.  Flow Cytometry-Based Determination of Ploidy from Dried Leaf Specimens in Genomically Complex Collections of the Tropical Forage Grass Urochloa s. l.

Authors:  Paulina Tomaszewska; Till K Pellny; Luis M Hernández; Rowan A C Mitchell; Valheria Castiblanco; José J de Vega; Trude Schwarzacher; Pat J S Heslop-Harrison
Journal:  Genes (Basel)       Date:  2021-06-23       Impact factor: 4.096

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.