Literature DB >> 17987259

Non-linear scission/recombination kinetics of living polymerization.

I A Nyrkova1, A N Semenov.   

Abstract

Living polymers are formed by reversible association of primary units (unimers). Generally the chain statistical weight involves a factor sigma < 1 suppressing short chains in comparison with free unimers. Living polymerization is a sharp thermodynamic transition for sigma << 1 which is typically the case. We show that this sharpness has an important effect on the kinetics of living polymerization (one-dimensional association). The kinetic model involves i) the unimer activation step (a transition to an assembly-competent state); ii) the scission/recombination processes providing growth of polymer chains and relaxation of their length distribution. Analyzing the polymerization with no chains but unimers at t = 0, with initial concentration of unimers M greater or approximately M(*) (M(*) is the critical polymerization concentration)), we determine the time evolution of the chain length distribution and find that: 1) for M(*) << M << M(*) /sigma the kinetics is characterized by 5 distinct time stages demarcated by 4 characteristic times t(1), t(2), t(3) and t(*); 2) there are transient regimes (t(1) less or approximately t less or approximately t(3)) when the molecular-weight distribution is strongly non-exponential; 3) the chain scissions are negligible at times shorter than t(2). The chain growth is auto-accelerated for t(1) less or approximately t less or approximately t(2) : the cut-off chain length (= polymerization degree ((n)w) N(1) proportional, variant t(2) in this regime. 4) For t(2) < t < t(3) the length distribution is characterized by essentially 2 non-linear modes; the shorter cut-off length N(1) is decreasing with time in this regime, while the length scale N(2) of the second mode is increasing. (5) The terminal relaxation time of the polymer length distribution, t(*), shows a sharp maximum in the vicinity of M(*); the effective exponent (partial partial differential ln 1/t(*)) divided by (partial partial differential ln M) is as high as approximately sigma(-1/3) just above M(*).

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Year:  2007        PMID: 17987259     DOI: 10.1140/epje/i2007-10227-y

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  8 in total

1.  Hierarchical self-assembly of chiral rod-like molecules as a model for peptide beta -sheet tapes, ribbons, fibrils, and fibers.

Authors:  A Aggeli; I A Nyrkova; M Bell; R Harding; L Carrick; T C McLeish; A N Semenov; N Boden
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-09       Impact factor: 11.205

Review 2.  Emerging ideas on the molecular basis of protein and peptide aggregation.

Authors:  D Thirumalai; D K Klimov; R I Dima
Journal:  Curr Opin Struct Biol       Date:  2003-04       Impact factor: 6.809

3.  Dynamics of living polymers.

Authors:  B O'Shaughnessy; D Vavylonis
Journal:  Eur Phys J E Soft Matter       Date:  2004-01-20       Impact factor: 1.890

4.  End-evaporation dynamics revisited.

Authors:  Johan L A Dubbeldam; Paul van der Schoot
Journal:  J Chem Phys       Date:  2005-10-08       Impact factor: 3.488

5.  Multimerization: closed or open association scenario?

Authors:  I A Nyrkova; A N Semenov
Journal:  Eur Phys J E Soft Matter       Date:  2005-06-23       Impact factor: 1.890

6.  Equilibrium polymerization of chains and rings: A bicritical phenomenon.

Authors: 
Journal:  Phys Rev A Gen Phys       Date:  1986-09

7.  Fragmentation of actin filaments.

Authors:  A Wegner; P Savko
Journal:  Biochemistry       Date:  1982-04-13       Impact factor: 3.162

8.  Living polymerization methods.

Authors:  O W Webster
Journal:  Science       Date:  1991-02-22       Impact factor: 47.728

  8 in total
  2 in total

1.  Dynamic Landau theory for supramolecular self-assembly.

Authors:  Nitin S Tiwari; Koen Merkus; Paul van der Schoot
Journal:  Eur Phys J E Soft Matter       Date:  2015-09-29       Impact factor: 1.890

Review 2.  The concept of strongly interacting groups in self-assembly of soft matter.

Authors:  I A Nyrkova; A N Semenov
Journal:  Eur Phys J E Soft Matter       Date:  2018-09-11       Impact factor: 1.890

  2 in total

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