Literature DB >> 17983580

Metabolomics.

Jeffrey R Idle1, Frank J Gonzalez.   

Abstract

Metabolomics is the systematic identification and quantitation of all metabolites in a given organism or biological sample. The enhanced resolution provided by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry (MS), along with powerful chemometric software, allows the simultaneous determination and comparison of thousands of chemical entities, which has lead to an expansion of small molecule biochemistry studies in bacteria, plants, and mammals. Continued development of these analytical platforms will accelerate the widespread use of metabolomics and allow further integration of small molecules into systems biology. Here, recent studies using metabolomics in xenobiotic metabolism and genetically modified mice are highlighted.

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Year:  2007        PMID: 17983580      PMCID: PMC2140247          DOI: 10.1016/j.cmet.2007.10.005

Source DB:  PubMed          Journal:  Cell Metab        ISSN: 1550-4131            Impact factor:   27.287


  16 in total

Review 1.  Metabolomics--the link between genotypes and phenotypes.

Authors:  Oliver Fiehn
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Rapid and noninvasive diagnosis of the presence and severity of coronary heart disease using 1H-NMR-based metabonomics.

Authors:  Joanne T Brindle; Henrik Antti; Elaine Holmes; George Tranter; Jeremy K Nicholson; Hugh W L Bethell; Sarah Clarke; Peter M Schofield; Elaine McKilligin; David E Mosedale; David J Grainger
Journal:  Nat Med       Date:  2002-11-25       Impact factor: 53.440

Review 3.  Metabonomics in pharmaceutical R&D.

Authors:  John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  FEBS J       Date:  2007-03       Impact factor: 5.542

4.  Pharmaco-metabonomic phenotyping and personalized drug treatment.

Authors:  T Andrew Clayton; John C Lindon; Olivier Cloarec; Henrik Antti; Claude Charuel; Gilles Hanton; Jean-Pierre Provost; Jean-Loïc Le Net; David Baker; Rosalind J Walley; Jeremy R Everett; Jeremy K Nicholson
Journal:  Nature       Date:  2006-04-20       Impact factor: 49.962

5.  A comprehensive investigation of 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine (PhIP) metabolism in the mouse using a multivariate data analysis approach.

Authors:  Chi Chen; Xiaochao Ma; Michael A Malfatti; Kristopher W Krausz; Shioko Kimura; James S Felton; Jeffrey R Idle; Frank J Gonzalez
Journal:  Chem Res Toxicol       Date:  2007-02-06       Impact factor: 3.739

6.  Urinary metabolite profiling reveals CYP1A2-mediated metabolism of NSC686288 (aminoflavone).

Authors:  Chi Chen; Linghua Meng; Xiaochao Ma; Kristopher W Krausz; Yves Pommier; Jeffrey R Idle; Frank J Gonzalez
Journal:  J Pharmacol Exp Ther       Date:  2006-06-14       Impact factor: 4.030

7.  Metagenomic analysis of the human distal gut microbiome.

Authors:  Steven R Gill; Mihai Pop; Robert T Deboy; Paul B Eckburg; Peter J Turnbaugh; Buck S Samuel; Jeffrey I Gordon; David A Relman; Claire M Fraser-Liggett; Karen E Nelson
Journal:  Science       Date:  2006-06-02       Impact factor: 47.728

8.  Physiological genomics of Escherichia coli protein families.

Authors:  Ping Liang; Bernard Labedan; Monica Riley
Journal:  Physiol Genomics       Date:  2002       Impact factor: 3.107

Review 9.  Environmental and chemical carcinogenesis.

Authors:  Gerald N Wogan; Stephen S Hecht; James S Felton; Allan H Conney; Lawrence A Loeb
Journal:  Semin Cancer Biol       Date:  2004-12       Impact factor: 15.707

10.  Metabolomic and genetic analysis of biomarkers for peroxisome proliferator-activated receptor alpha expression and activation.

Authors:  Yueying Zhen; Kristopher W Krausz; Chi Chen; Jeffrey R Idle; Frank J Gonzalez
Journal:  Mol Endocrinol       Date:  2007-06-05
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  54 in total

Review 1.  Xenobiotic metabolism: a view through the metabolometer.

Authors:  Andrew D Patterson; Frank J Gonzalez; Jeffrey R Idle
Journal:  Chem Res Toxicol       Date:  2010-05-17       Impact factor: 3.739

2.  Carnitine palmitoyltransferase 1C regulates cancer cell senescence through mitochondria-associated metabolic reprograming.

Authors:  Yongtao Wang; Yixin Chen; Lihuan Guan; Huizheng Zhang; Yaoyao Huang; Caroline H Johnson; Zeming Wu; Frank J Gonzalez; Aiming Yu; Peng Huang; Ying Wang; Shouhui Yang; Pan Chen; Xiaomei Fan; Min Huang; Huichang Bi
Journal:  Cell Death Differ       Date:  2018-01-09       Impact factor: 15.828

Review 3.  Analytical approaches to metabolomics and applications to systems biology.

Authors:  Jeffrey H Wang; Jaeman Byun; Subramaniam Pennathur
Journal:  Semin Nephrol       Date:  2010-09       Impact factor: 5.299

Review 4.  Evaluation of in vitro assays for assessing the toxicity of cigarette smoke and smokeless tobacco.

Authors:  Michael D Johnson; Jodi Schilz; Mirjana V Djordjevic; Jerry R Rice; Peter G Shields
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2009-12       Impact factor: 4.254

Review 5.  Experimental design and reporting standards for metabolomics studies of mammalian cell lines.

Authors:  Sarah Hayton; Garth L Maker; Ian Mullaney; Robert D Trengove
Journal:  Cell Mol Life Sci       Date:  2017-07-01       Impact factor: 9.261

6.  Characterization of differential cocaine metabolism in mouse and rat through metabolomics-guided metabolite profiling.

Authors:  Dan Yao; Xiaolei Shi; Lei Wang; Blake A Gosnell; Chi Chen
Journal:  Drug Metab Dispos       Date:  2012-10-03       Impact factor: 3.922

7.  Metabolomics reveals a novel vitamin E metabolite and attenuated vitamin E metabolism upon PXR activation.

Authors:  Joo-Youn Cho; Dong Wook Kang; Xiaochao Ma; Sung-Hoon Ahn; Kristopher W Krausz; Hans Luecke; Jeffrey R Idle; Frank J Gonzalez
Journal:  J Lipid Res       Date:  2009-01-13       Impact factor: 5.922

8.  Urinary metabolomics in Fxr-null mice reveals activated adaptive metabolic pathways upon bile acid challenge.

Authors:  Joo-Youn Cho; Tsutomu Matsubara; Dong Wook Kang; Sung-Hoon Ahn; Kristopher W Krausz; Jeffrey R Idle; Hans Luecke; Frank J Gonzalez
Journal:  J Lipid Res       Date:  2009-11-09       Impact factor: 5.922

Review 9.  Computational Metabolomics: A Framework for the Million Metabolome.

Authors:  Karan Uppal; Douglas I Walker; Ken Liu; Shuzhao Li; Young-Mi Go; Dean P Jones
Journal:  Chem Res Toxicol       Date:  2016-10-12       Impact factor: 3.739

Review 10.  The metabolomic window into hepatobiliary disease.

Authors:  Diren Beyoğlu; Jeffrey R Idle
Journal:  J Hepatol       Date:  2013-05-25       Impact factor: 25.083

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