Literature DB >> 17976380

Locked 5Zs-biliverdin blocks the Meta-RA to Meta-RC transition in the functional cycle of bacteriophytochrome Agp1.

Sven Seibeck1, Berthold Borucki, Harald Otto, Katsuhiko Inomata, Htoi Khawn, Hideki Kinoshita, Norbert Michael, Tilman Lamparter, Maarten P Heyn.   

Abstract

The bacteriophytochrome Agp1 was reconstituted with a locked 5Zs-biliverdin in which the C(4)=C(5) and C(5)-C(6) bonds of the methine bridge between rings A and B are fixed in the Z and syn configuration/conformation, respectively. In Agp1-5Zs the photoconversion proceeds via the Lumi-R intermediate to Meta-R(A), but the following millisecond-transition to Meta-R(C) is blocked. Consistently, no transient proton release was detected. The photoconversion of Agp1-5Zs is apparently arrested in a Meta-R(A)-like intermediate, since the subsequent syn to anti rotation around the C(5)-C(6) bond is prevented by the lock. The Meta-R(A)-like photoproduct was characterized by its distinctive CD spectrum suggesting a reorientation of ring D.

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Year:  2007        PMID: 17976380     DOI: 10.1016/j.febslet.2007.10.043

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  11 in total

1.  Fluorescence of phytochrome adducts with synthetic locked chromophores.

Authors:  Benjamin Zienicke; Li-Yi Chen; Htoi Khawn; Mostafa A S Hammam; Hideki Kinoshita; Johannes Reichert; Anne S Ulrich; Katsuhiko Inomata; Tilman Lamparter
Journal:  J Biol Chem       Date:  2010-11-11       Impact factor: 5.157

2.  Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.

Authors:  Xiaojing Yang; Zhong Ren; Jane Kuk; Keith Moffat
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

3.  Distinct classes of red/far-red photochemistry within the phytochrome superfamily.

Authors:  Nathan C Rockwell; Lixia Shang; Shelley S Martin; J Clark Lagarias
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-01       Impact factor: 11.205

4.  A polarity probe for monitoring light-induced structural changes at the entrance of the chromophore pocket in a bacterial phytochrome.

Authors:  Berthold Borucki; Tilman Lamparter
Journal:  J Biol Chem       Date:  2009-07-29       Impact factor: 5.157

5.  Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state.

Authors:  Gabriel Cornilescu; Andrew T Ulijasz; Claudia C Cornilescu; John L Markley; Richard D Vierstra
Journal:  J Mol Biol       Date:  2008-08-22       Impact factor: 5.469

6.  A second conserved GAF domain cysteine is required for the blue/green photoreversibility of cyanobacteriochrome Tlr0924 from Thermosynechococcus elongatus.

Authors:  Nathan C Rockwell; Stephanie Lane Njuguna; Laurel Roberts; Elenor Castillo; Victoria L Parson; Sunshine Dwojak; J Clark Lagarias; Susan C Spiller
Journal:  Biochemistry       Date:  2008-06-13       Impact factor: 3.162

7.  Blue protein with red fluorescence.

Authors:  Swagatha Ghosh; Chi-Li Yu; Daniel J Ferraro; Sai Sudha; Samir Kumar Pal; Wayne F Schaefer; David T Gibson; S Ramaswamy
Journal:  Proc Natl Acad Sci U S A       Date:  2016-09-29       Impact factor: 11.205

8.  Assembly of synthetic locked phycocyanobilin derivatives with phytochrome in vitro and in vivo in Ceratodon purpureus and Arabidopsis.

Authors:  Rui Yang; Kaori Nishiyama; Ayumi Kamiya; Yutaka Ukaji; Katsuhiko Inomata; Tilman Lamparter
Journal:  Plant Cell       Date:  2012-05-11       Impact factor: 11.277

9.  Electronic transitions and heterogeneity of the bacteriophytochrome Pr absorption band: An angle balanced polarization resolved femtosecond VIS pump-IR probe study.

Authors:  Martin Linke; Yang Yang; Benjamin Zienicke; Mostafa A S Hammam; Theodore von Haimberger; Angelica Zacarias; Katsuhiko Inomata; Tilman Lamparter; Karsten Heyne
Journal:  Biophys J       Date:  2013-10-15       Impact factor: 4.033

10.  Structural basis for the photoconversion of a phytochrome to the activated Pfr form.

Authors:  Andrew T Ulijasz; Gabriel Cornilescu; Claudia C Cornilescu; Junrui Zhang; Mario Rivera; John L Markley; Richard D Vierstra
Journal:  Nature       Date:  2010-01-14       Impact factor: 49.962

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