Literature DB >> 17973429

Synthesis of urea picket porphyrins and their use in the elucidation of the role buried solvent plays in the selectivity and stoichiometry of anion binding receptors.

Kenichi Calderon-Kawasaki1, Sumith Kularatne, Yue Hu Li, Bruce C Noll, W Robert Scheidt, Dennis H Burns.   

Abstract

The synthesis of alpha,alpha-5,10-diurea and alpha,alpha,alpha-5,10,15-triurea picket porphyrins are detailed in this report. In previous reports, these porphyrins, along with alpha,alpha,alpha,alpha-5,10,15,20-tetraurea picket porphyrin, were used to demonstrate the important role one buried solvent molecule plays in the selectivity and stoichiometry of binding inorganic anions. Building on prior work, this report discusses the results of acetate anion binding studies between tetra- and diurea picket porphyrins (the latter does not contain a buried solvent molecule in the anion-receptor complex), compares differences in thermodynamic data obtained from van't Hoff plots of a porphyrin anion receptor able to utilize buried solvent in its binding motif with one that does not, and compares the crystal structure of a tetraurea porphyrin 1-chloride anion complex that contains buried solvent with new X-ray crystal structures of tetraurea porphyrin 1-dichloride or bisdihydrogenphosphate anion complexes that contain no buried solvent. Data from our previous work, and the work described herein, demonstrates that one buried solvent molecule provides stability to the receptor-anion complex that is similar in energy to a moderately strong hydrogen bond.

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Year:  2007        PMID: 17973429      PMCID: PMC2518125          DOI: 10.1021/jo701443c

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  19 in total

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3.  Surface changes and role of buried water molecules during the sulfane sulfur transfer in rhodanese from Azotobacter vinelandii: a fluorescence quenching and nuclear magnetic relaxation dispersion spectroscopic study.

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4.  Conserved water molecules in MHC class-I molecules and their putative structural and functional roles.

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Journal:  Protein Eng       Date:  2002-08

5.  Conserved water molecules contribute to the extensive network of interactions at the active site of protein kinase A.

Authors:  S Shaltiel; S Cox; S S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  1998-01-20       Impact factor: 11.205

6.  An ion-selective electrode for acetate based on a urea-functionalized porphyrin as a hydrogen-bonding ionophore.

Authors:  S Amemiya; P Bühlmann; Y Umezawa; R C Jagessar; D H Burns
Journal:  Anal Chem       Date:  1999-03-01       Impact factor: 6.986

7.  Buried solvent determines both anion-binding selectivity and binding stoichiometry with hydrogen-bonding receptors.

Authors:  Dennis H Burns; Kenichi Calderon-Kawasaki; Sumith Kularatne
Journal:  J Org Chem       Date:  2005-04-01       Impact factor: 4.354

8.  A strategy for the incorporation of water molecules present in a ligand binding site into a three-dimensional quantitative structure--activity relationship analysis.

Authors:  M Pastor; G Cruciani; K A Watson
Journal:  J Med Chem       Date:  1997-12-05       Impact factor: 7.446

Review 9.  Just add water! The effect of water on the specificity of protein-ligand binding sites and its potential application to drug design.

Authors:  J E Ladbury
Journal:  Chem Biol       Date:  1996-12

10.  A molecular dynamics investigation of mono and dimeric states of the outer membrane enzyme OMPLA.

Authors:  Marc Baaden; Christoph Meier; Mark S P Sansom
Journal:  J Mol Biol       Date:  2003-08-01       Impact factor: 5.469

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  1 in total

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  1 in total

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