Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 AILUN: reannotating gene expression data automatically.

Literature DB >> 17971777

AILUN: reannotating gene expression data automatically.

Rong Chen, Li Li, Atul J Butte.

Abstract

Mesh：

Year: 2007 PMID： 17971777 PMCID： PMC2716375 DOI： 10.1038/nmeth1107-879

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

× No keyword cloud information.

4 in total

1. NetAffx: Affymetrix probesets and annotations.

Authors: Guoying Liu; Ann E Loraine; Ron Shigeta; Melissa Cline; Jill Cheng; Venu Valmeekam; Shaw Sun; David Kulp; Michael A Siani-Rose
Journal: Nucleic Acids Res Date: 2003-01-01 Impact factor: 16.971

2. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

Authors: Manhong Dai; Pinglang Wang; Andrew D Boyd; Georgi Kostov; Brian Athey; Edward G Jones; William E Bunney; Richard M Myers; Terry P Speed; Huda Akil; Stanley J Watson; Fan Meng
Journal: Nucleic Acids Res Date: 2005-11-10 Impact factor: 16.971

3. NCBI GEO: mining tens of millions of expression profiles--database and tools update.

Authors: Tanya Barrett; Dennis B Troup; Stephen E Wilhite; Pierre Ledoux; Dmitry Rudnev; Carlos Evangelista; Irene F Kim; Alexandra Soboleva; Maxim Tomashevsky; Ron Edgar
Journal: Nucleic Acids Res Date: 2006-11-11 Impact factor: 16.971

4. Inconsistencies over time in 5% of NetAffx probe-to-gene annotations.

Authors: Carolina Perez-Iratxeta; Miguel A Andrade
Journal: BMC Bioinformatics Date: 2005-07-20 Impact factor: 3.169

4 in total

69 in total

1. Consistent annotation of gene expression arrays.

Authors: Benoît Ballester; Nathan Johnson; Glenn Proctor; Paul Flicek
Journal: BMC Genomics Date: 2010-05-11 Impact factor: 3.969

2. ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.

Authors: Jesse M Engreitz; Rong Chen; Alexander A Morgan; Joel T Dudley; Rohan Mallelwar; Atul J Butte
Journal: Bioinformatics Date: 2011-10-03 Impact factor: 6.937

Review 3. Computational tools for prioritizing candidate genes: boosting disease gene discovery.

Authors: Yves Moreau; Léon-Charles Tranchevent
Journal: Nat Rev Genet Date: 2012-07-03 Impact factor: 53.242

Review 4. Molecular diagnostics in transplantation.

Authors: Maarten Naesens; Minnie M Sarwal
Journal: Nat Rev Nephrol Date: 2010-08-24 Impact factor: 28.314

5. Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and "antibodyome" measures.

Authors: Li Li; Persis Wadia; Rong Chen; Neeraja Kambham; Maarten Naesens; Tara K Sigdel; David B Miklos; Minnie M Sarwal; Atul J Butte
Journal: Proc Natl Acad Sci U S A Date: 2009-02-27 Impact factor: 11.205

AILUN: reannotating gene expression data automatically.

1. NetAffx: Affymetrix probesets and annotations.

2. Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data.

3. NCBI GEO: mining tens of millions of expression profiles--database and tools update.

4. Inconsistencies over time in 5% of NetAffx probe-to-gene annotations.

1. Consistent annotation of gene expression arrays.

2. ProfileChaser: searching microarray repositories based on genome-wide patterns of differential expression.

Review 3. Computational tools for prioritizing candidate genes: boosting disease gene discovery.

Review 4. Molecular diagnostics in transplantation.

5. Identifying compartment-specific non-HLA targets after renal transplantation by integrating transcriptome and "antibodyome" measures.

6. Transcriptional Perturbations in Graft Rejection.

7. Dynamism in gene expression across multiple studies.

8. Molecular pathways: extracting medical knowledge from high-throughput genomic data.

9. Identification of cell surface targets through meta-analysis of microarray data.

10. Disease signatures are robust across tissues and experiments.