Literature DB >> 17968707

The virtual human: towards a global systems biology of multiscale, distributed biochemical network models.

Douglas B Kell1.   

Abstract

There is an emerging recognition of the importance of modelling large-scale biochemical systems, with the 'digital human' an obviously desirable goal. This will then permit researchers to analyse the behaviour of such systems in silico so as to be able to perform 'what-if?' experiments prior to determining whether they are actually worthwhile or not, and for understanding whether a particular model does in fact describe or predict experimental observations. Existing and developing standards such as SBML are beginning to permit the principled storage and exchange of biochemical network models, while environments for effecting distributed workflows (such as Taverna) will allow us to link together these models and their behaviour. This allows the local experts to work on those parts of cellular or organellar biochemistry on which they have most expertise, while making their results available to the community as a whole. This kind of architecture permits the distributed yet integrated goal of an evolving 'digital human' model to be realized.

Entities:  

Mesh:

Year:  2007        PMID: 17968707     DOI: 10.1080/15216540701694252

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  12 in total

Review 1.  Towards a unifying, systems biology understanding of large-scale cellular death and destruction caused by poorly liganded iron: Parkinson's, Huntington's, Alzheimer's, prions, bactericides, chemical toxicology and others as examples.

Authors:  Douglas B Kell
Journal:  Arch Toxicol       Date:  2010-08-17       Impact factor: 5.153

2.  Characteristics of mathematical modeling languages that facilitate model reuse in systems biology: a software engineering perspective.

Authors:  Christopher Schölzel; Valeria Blesius; Gernot Ernst; Andreas Dominik
Journal:  NPJ Syst Biol Appl       Date:  2021-06-03

3.  Genome-wide assessment of the carriers involved in the cellular uptake of drugs: a model system in yeast.

Authors:  Karin Lanthaler; Elizabeth Bilsland; Paul D Dobson; Harry J Moss; Pınar Pir; Douglas B Kell; Stephen G Oliver
Journal:  BMC Biol       Date:  2011-10-24       Impact factor: 7.431

4.  Scientific discovery as a combinatorial optimisation problem: how best to navigate the landscape of possible experiments?

Authors:  Douglas B Kell
Journal:  Bioessays       Date:  2012-01-18       Impact factor: 4.345

Review 5.  Systems Medicine: The Application of Systems Biology Approaches for Modern Medical Research and Drug Development.

Authors:  Duncan Ayers; Philip J Day
Journal:  Mol Biol Int       Date:  2015-08-18

Review 6.  A Review of Recent Advancement in Integrating Omics Data with Literature Mining towards Biomedical Discoveries.

Authors:  Kalpana Raja; Matthew Patrick; Yilin Gao; Desmond Madu; Yuyang Yang; Lam C Tsoi
Journal:  Int J Genomics       Date:  2017-02-26       Impact factor: 2.326

7.  Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases.

Authors:  Douglas B Kell
Journal:  BMC Med Genomics       Date:  2009-01-08       Impact factor: 3.063

8.  Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes.

Authors:  Neema Jamshidi; Bernhard O Palsson
Journal:  BMC Syst Biol       Date:  2009-04-30

Review 9.  Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery.

Authors:  Douglas B Kell; Royston Goodacre
Journal:  Drug Discov Today       Date:  2013-07-26       Impact factor: 7.851

Review 10.  Breakthroughs in modern cancer therapy and elusive cardiotoxicity: Critical research-practice gaps, challenges, and insights.

Authors:  Ping-Pin Zheng; Jin Li; Johan M Kros
Journal:  Med Res Rev       Date:  2017-09-01       Impact factor: 12.944

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