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Literature DB >> 17967697

NMR methods for studying quadruplex nucleic acids.

Abstract

Solution NMR spectroscopy has traditionally played a central role in examining quadruplex structure, dynamics, and interactions. Here, an overview is given of the methods currently applied to structural, dynamics, thermodynamics, and kinetics studies of nucleic acid quadruplexes and associated cations.

Mesh：

Substances：
Ligands
Guanine

Year: 2007 PMID： 17967697 DOI： 10.1016/j.ymeth.2007.05.007

Source DB: PubMed Journal: Methods ISSN： 1046-2023 Impact factor: 3.608

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Cited

28 in total

1. An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates.

Authors: Elizabeth O'Day; Minh T N Le; Shunsuke Imai; Shen Mynn Tan; Rory Kirchner; Haribabu Arthanari; Oliver Hofmann; Gerhard Wagner; Judy Lieberman
Journal: J Biol Chem Date: 2015-06-04 Impact factor: 5.157

Review 2. Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.

Authors: Chun Kit Kwok; Giovanni Marsico; Shankar Balasubramanian
Journal: Cold Spring Harb Perspect Biol Date: 2018-07-02 Impact factor: 10.005

3. Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism.

Authors: Eric Largy; Jean-Louis Mergny
Journal: Nucleic Acids Res Date: 2014-08-20 Impact factor: 16.971

4. Harnessing intrinsic fluorescence for typing of secondary structures of DNA.

Authors: Michela Zuffo; Aurélie Gandolfini; Brahim Heddi; Anton Granzhan
Journal: Nucleic Acids Res Date: 2020-06-19 Impact factor: 16.971

5. Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment.

Authors: Regan M LeBlanc; Andrew P Longhini; Stuart F J Le Grice; Bruce A Johnson; Theodore K Dayie
Journal: Nucleic Acids Res Date: 2017-09-19 Impact factor: 16.971

NMR methods for studying quadruplex nucleic acids.

1. An RNA-binding Protein, Lin28, Recognizes and Remodels G-quartets in the MicroRNAs (miRNAs) and mRNAs It Regulates.

Review 2. Detecting RNA G-Quadruplexes (rG4s) in the Transcriptome.

3. Shape matters: size-exclusion HPLC for the study of nucleic acid structural polymorphism.

4. Harnessing intrinsic fluorescence for typing of secondary structures of DNA.

5. Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment.

Review 6. Stability and kinetics of G-quadruplex structures.

7. Coexistence of two main folded G-quadruplexes within a single G-rich domain in the EGFR promoter.

8. A guide to computational methods for G-quadruplex prediction.

9. Diarylethynyl amides that recognize the parallel conformation of genomic promoter DNA G-quadruplexes.

10. Identification and Structural Aspects of G-Quadruplex-Forming Sequences from the Influenza A Virus Genome.