Literature DB >> 17964807

Recombinant expression of twelve evolutionarily diverse subfamily Ialpha aminotransferases.

Kathryn E Muratore1, John R Srouji, Margaret A Chow, Jack F Kirsch.   

Abstract

Aminotransferases are essential enzymes involved in the central metabolism of all organisms. The Ialpha subfamily of aspartate and tyrosine aminotransferases (AATases and TATases) is the best-characterized grouping, but only eight enzymes from this subfamily, representing relatively little sequence diversity, have been experimentally characterized for substrate specificity (i.e., AATase vs. TATase). Genome annotation, based on this limited dataset, provides tentative assignments for all sequenced members of this subfamily. This procedure is, however, subject to error, particularly when the experimental basis set is limited. To address this problem we cloned twelve additional subfamily Ialpha enzymes from an evolutionarily divergent set of organisms. Nine were purified to homogeneity after heterologous expression in Escherichia coli in native, intein-tagged or His(6)-tagged forms. The two Saccharomyces cerevisiae isoforms were recombinantly produced in yeast. The effects of the C-terminal tags on expression, purification and enzyme activity are discussed.

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Year:  2007        PMID: 17964807      PMCID: PMC2713771          DOI: 10.1016/j.pep.2007.09.002

Source DB:  PubMed          Journal:  Protein Expr Purif        ISSN: 1046-5928            Impact factor:   1.650


  37 in total

1.  Intrinsic errors in genome annotation.

Authors:  D Devos; A Valencia
Journal:  Trends Genet       Date:  2001-08       Impact factor: 11.639

2.  Methionine regeneration and aspartate aminotransferase in parasitic protozoa.

Authors:  L C Berger; J Wilson; P Wood; B J Berger
Journal:  J Bacteriol       Date:  2001-08       Impact factor: 3.490

3.  Elimination of in vivo cleavage between target protein and intein in the intein-mediated protein purification systems.

Authors:  Chunxian Cui; Wentao Zhao; Jianglei Chen; Jianjun Wang; Qianqian Li
Journal:  Protein Expr Purif       Date:  2006-06-15       Impact factor: 1.650

4.  Cofactor-directed reversible denaturation pathways: the cofactor-stabilized Escherichia coli aspartate aminotransferase homodimer unfolds through a pathway that differs from that of the apoenzyme.

Authors:  Edgar Deu; Jack F Kirsch
Journal:  Biochemistry       Date:  2007-04-19       Impact factor: 3.162

5.  Expression of the class 1 outer-membrane protein of Neisseria meningitidis in Escherichia coli and purification using a self-cleavable affinity tag.

Authors:  Holly E Humphries; Myron Christodoulides; John E Heckels
Journal:  Protein Expr Purif       Date:  2002-11       Impact factor: 1.650

6.  Predicting subcellular localization of proteins based on their N-terminal amino acid sequence.

Authors:  O Emanuelsson; H Nielsen; S Brunak; G von Heijne
Journal:  J Mol Biol       Date:  2000-07-21       Impact factor: 5.469

7.  Directed evolution relieves product inhibition and confers in vivo function to a rationally designed tyrosine aminotransferase.

Authors:  Steven C Rothman; Mark Voorhies; Jack F Kirsch
Journal:  Protein Sci       Date:  2004-02-06       Impact factor: 6.725

8.  DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Authors:  J F Heidelberg; J A Eisen; W C Nelson; R A Clayton; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; L Umayam; S R Gill; K E Nelson; T D Read; H Tettelin; D Richardson; M D Ermolaeva; J Vamathevan; S Bass; H Qin; I Dragoi; P Sellers; L McDonald; T Utterback; R D Fleishmann; W C Nierman; O White; S L Salzberg; H O Smith; R R Colwell; J J Mekalanos; J C Venter; C M Fraser
Journal:  Nature       Date:  2000-08-03       Impact factor: 49.962

9.  Protein molecular function prediction by Bayesian phylogenomics.

Authors:  Barbara E Engelhardt; Michael I Jordan; Kathryn E Muratore; Steven E Brenner
Journal:  PLoS Comput Biol       Date:  2005-10-07       Impact factor: 4.475

10.  The Universal Protein Resource (UniProt).

Authors:  Amos Bairoch; Rolf Apweiler; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

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  2 in total

1.  Engineering homooligomeric proteins to detect weak intersite allosteric communication: aminotransferases, a case study.

Authors:  Edgar Deu; Jack F Kirsch
Journal:  Protein Sci       Date:  2011-11-01       Impact factor: 6.725

2.  Molecular function prediction for a family exhibiting evolutionary tendencies toward substrate specificity swapping: recurrence of tyrosine aminotransferase activity in the Iα subfamily.

Authors:  Kathryn E Muratore; Barbara E Engelhardt; John R Srouji; Michael I Jordan; Steven E Brenner; Jack F Kirsch
Journal:  Proteins       Date:  2013-06-17
  2 in total

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