Literature DB >> 17961857

Bacterial genome sequencing and its use in infectious diseases.

Pierre-Edouard Fournier1, Michel Drancourt, Didier Raoult.   

Abstract

The availability of genome sequences is revolutionising the fields of bacteriology and infectious diseases. By mid-2007, 479 bacterial genomes from 352 distinct species have been sequenced, including representatives of all notable human pathogens. Additionally, the genomes of several strains from each of 55 species have been sequenced. This tremendous amount of genomic data has led to unprecedented advances in pathogen diagnosis, genotyping, detection of virulence, and detection of resistance to antibiotics. We review current achievements in these fields and potential developments in the future for the clinical microbiology laboratory.

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Mesh：

Year:  2007        PMID： 17961857     DOI： 10.1016/S1473-3099(07)70260-8

Source DB:  PubMed          Journal:  Lancet Infect Dis        ISSN： 1473-3099            Impact factor:   25.071


  32 in total

1.  Rapid comparative genomic analysis for clinical microbiology: the Francisella tularensis paradigm.

Authors:  Bernard La Scola; Khalid Elkarkouri; Wenjun Li; Tara Wahab; Ghislain Fournous; Jean-Marc Rolain; Silpak Biswas; Michel Drancourt; Catherine Robert; Stéphane Audic; Sven Löfdahl; Didier Raoult
Journal:  Genome Res       Date:  2008-04-11       Impact factor: 9.043

Review 2.  Update on tick-borne rickettsioses around the world: a geographic approach.

Authors:  Philippe Parola; Christopher D Paddock; Cristina Socolovschi; Marcelo B Labruna; Oleg Mediannikov; Tahar Kernif; Mohammad Yazid Abdad; John Stenos; Idir Bitam; Pierre-Edouard Fournier; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2013-10       Impact factor: 26.132

3.  The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota.

Authors:  Jean-Christophe Lagier; Perrine Hugon; Saber Khelaifia; Pierre-Edouard Fournier; Bernard La Scola; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

Review 4.  Current and past strategies for bacterial culture in clinical microbiology.

Authors:  Jean-Christophe Lagier; Sophie Edouard; Isabelle Pagnier; Oleg Mediannikov; Michel Drancourt; Didier Raoult
Journal:  Clin Microbiol Rev       Date:  2015-01       Impact factor: 26.132

5.  Microbial variome database: point mutations, adaptive or not, in bacterial core genomes.

Authors:  Sujay Chattopadhyay; Fred Taub; Sandip Paul; Scott J Weissman; Evgeni V Sokurenko
Journal:  Mol Biol Evol       Date:  2013-03-14       Impact factor: 16.240

6.  Genome sequencing of linezolid-resistant Streptococcus pneumoniae mutants reveals novel mechanisms of resistance.

Authors:  Jie Feng; Andréanne Lupien; Hélène Gingras; Jessica Wasserscheid; Ken Dewar; Danielle Légaré; Marc Ouellette
Journal:  Genome Res       Date:  2009-04-06       Impact factor: 9.043

7.  Real-time genomic epidemiological evaluation of human Campylobacter isolates by use of whole-genome multilocus sequence typing.

Authors:  Alison J Cody; Noel D McCarthy; Melissa Jansen van Rensburg; Tomide Isinkaye; Stephen D Bentley; Julian Parkhill; Kate E Dingle; Ian C J W Bowler; Keith A Jolley; Martin C J Maiden
Journal:  J Clin Microbiol       Date:  2013-05-22       Impact factor: 5.948

8.  Overcoming function annotation errors in the Gram-positive pathogen Streptococcus suis by a proteomics-driven approach.

Authors:  Manuel J Rodríguez-Ortega; Inmaculada Luque; Carmen Tarradas; José A Bárcena
Journal:  BMC Genomics       Date:  2008-12-05       Impact factor: 3.969

9.  Analysis of genomic signatures in prokaryotes using multinomial regression and hierarchical clustering.

Authors:  Jon Bohlin; Eystein Skjerve; David W Ussery
Journal:  BMC Genomics       Date:  2009-10-21       Impact factor: 3.969

10.  Examination of genome homogeneity in prokaryotes using genomic signatures.

Authors:  Jon Bohlin; Eystein Skjerve
Journal:  PLoS One       Date:  2009-12-02       Impact factor: 3.240
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