Literature DB >> 17958357

Co(III) complexes with N2(SO)2-type equatorial planar ligands similar to the active center of nitrile hydratase: role of the sulfenate group in the enzymatic reaction.

Takuma Yano1, Yuko Wasada-Tsutsui, Hidekazu Arii, Syuhei Yamaguchi, Yasuhiro Funahashi, Tomohiro Ozawa, Hideki Masuda.   

Abstract

In order to gain an understanding of the role of the sulfenyl group of nitrile hydratase (NHase), a new Co(III) complex with a sulfenyl-type ligand (LC=O:N2(SO)2), Na[CoIII(LC=O:N2(SO)2)(tBuNC)2] (2), was synthesized. The compound includes two amide groups, two sulfenate sulfurs in the equatorial plane, and two tBuNC molecules in the axial positions. Characterization of the compound was performed by UV-vis spectroscopic, IR spectral, thermogravimetric (TG), and X-ray structure analytical methods. The results are discussed in the context of Co(III) complexes containing the corresponding sulfur-type (LC=O:N2S2) (1) and sulfinyl-type ligands (LC=O:N2(SO2)2) (3). Complex 2 crystallized with the formula Na[CoIII(LC=O:N2(SO)2)(tBuNC)2].urea.2H2O.0.5EtOH. The X-ray structure revealed that the Co(III) complex has an octahedral geometry with Co-S=av. 2.221 A, Co-N=av. 1.998 A, and Co-C=av. 1.87 A. The sulfenyl oxygen and amidate carbonyl oxygen are linked to urea, water, EtOH, and Na+ and participate in a hydrogen-bond and an electrostatic interaction. IR and TG measurements demonstrated that the coordination strength of tBuNC to the Co atom increases as follows: 1<2<3. Complex 2 has almost the same stability as 3 in all solutions tested, although 1 exhibits a release of axial ligands in nonaqueous solutions. DFT calculations for 1, 2, and 3 demonstrated that Milliken atomic charges of the Co(III) centers are +1.466, +1.536, and +1.542, respectively, indicating that the extent of oxidation of the sulfur atoms increases the Lewis acidity of the Co(III) centers. Interestingly, the solution-state IR spectrum of 2 exhibits a solvent-dependent S-O stretching frequency. The frequency decreases with an increase in the electrophilicity (acceptor number) of the solvent. This solvent dependence was not observed for 3, which has a sulfinate (SO2) group, suggesting that the sulfenyl oxygen atom has nucleophilic character and promotes strong binding of the tBuNC molecule to lower the reaction barrier. These findings may suggest that the sulfenate oxygen in native NHase acts as a base (proton acceptor) and contributes to the activation of a water molecule and/or nitrile molecule.

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Year:  2007        PMID: 17958357     DOI: 10.1021/ic701107x

Source DB:  PubMed          Journal:  Inorg Chem        ISSN: 0020-1669            Impact factor:   5.165


  5 in total

1.  Use of metallopeptide based mimics demonstrates that the metalloprotein nitrile hydratase requires two oxidized cysteinates for catalytic activity.

Authors:  Jason Shearer; Paige E Callan; Justina Amie
Journal:  Inorg Chem       Date:  2010-10-04       Impact factor: 5.165

2.  Kinetic and structural studies on roles of the serine ligand and a strictly conserved tyrosine residue in nitrile hydratase.

Authors:  Yasuaki Yamanaka; Koichi Hashimoto; Akashi Ohtaki; Keiichi Noguchi; Masafumi Yohda; Masafumi Odaka
Journal:  J Biol Inorg Chem       Date:  2010-03-10       Impact factor: 3.358

3.  Identification of an Intermediate Species along the Nitrile Hydratase Reaction Pathway by EPR Spectroscopy.

Authors:  Wasantha Lankathilaka Karunagala Pathiranage; Natalie Gumataotao; Adam T Fiedler; Richard C Holz; Brian Bennett
Journal:  Biochemistry       Date:  2021-11-29       Impact factor: 3.162

4.  Catalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile.

Authors:  Koichi Hashimoto; Hiroyuki Suzuki; Kayoko Taniguchi; Takumi Noguchi; Masafumi Yohda; Masafumi Odaka
Journal:  J Biol Chem       Date:  2008-10-23       Impact factor: 5.157

5.  The active site sulfenic acid ligand in nitrile hydratases can function as a nucleophile.

Authors:  Salette Martinez; Rui Wu; Ruslan Sanishvili; Dali Liu; Richard Holz
Journal:  J Am Chem Soc       Date:  2014-01-13       Impact factor: 15.419

  5 in total

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