Literature DB >> 17956083

Prediction of 1H NMR coupling constants with associative neural networks trained for chemical shifts.

Yuri Binev1, Maria M B Marques, João Aires-de-Sousa.   

Abstract

Fast accurate predictions of 1H NMR spectra of organic compounds play an important role in structure validation, automatic structure elucidation, or calibration of chemometric methods. The SPINUS program is a feed-forward neural network (FFNN) system developed over the last 8 years for the prediction of 1H NMR properties from the molecular structure. It was trained using a series of empirical proton descriptors. Ensembles of FFNNs were incorporated into Associative Neural Networks (ASNN), which correct a prediction on the basis of the observed errors for the k nearest neighbors in an additional memory. Here we show a procedure to estimate coupling constants with the ASNNs trained for chemical shifts-a second memory is linked consisting of coupled protons and their experimental coupling constants. An ASNN finds the pairs of coupled protons most similar to a query, and these are used to estimate coupling constants. Using a diverse general data set of 618 coupling constants, mean absolute errors of 0.6-0.8 Hz could be achieved in different experiments. A Web interface for 1H NMR full-spectrum prediction is available at http://www.dq.fct.unl.pt/spinus.

Entities:  

Year:  2007        PMID: 17956083     DOI: 10.1021/ci700172n

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  10 in total

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3.  Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening.

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5.  "Ask Ernö": a self-learning tool for assignment and prediction of nuclear magnetic resonance spectra.

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6.  A metabolic database for biomedical studies of biopsy specimens by high-resolution magic angle spinning nuclear MR: a qualitative and quantitative tool.

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7.  In Situ Characterization of Mixtures of Linear and Branched Hydrocarbons Confined within Porous Media Using 2D DQF-COSY NMR Spectroscopy.

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Review 8.  The value of universally available raw NMR data for transparency, reproducibility, and integrity in natural product research.

Authors:  James B McAlpine; Shao-Nong Chen; Andrei Kutateladze; John B MacMillan; Giovanni Appendino; Andersson Barison; Mehdi A Beniddir; Maique W Biavatti; Stefan Bluml; Asmaa Boufridi; Mark S Butler; Robert J Capon; Young H Choi; David Coppage; Phillip Crews; Michael T Crimmins; Marie Csete; Pradeep Dewapriya; Joseph M Egan; Mary J Garson; Grégory Genta-Jouve; William H Gerwick; Harald Gross; Mary Kay Harper; Precilia Hermanto; James M Hook; Luke Hunter; Damien Jeannerat; Nai-Yun Ji; Tyler A Johnson; David G I Kingston; Hiroyuki Koshino; Hsiau-Wei Lee; Guy Lewin; Jie Li; Roger G Linington; Miaomiao Liu; Kerry L McPhail; Tadeusz F Molinski; Bradley S Moore; Joo-Won Nam; Ram P Neupane; Matthias Niemitz; Jean-Marc Nuzillard; Nicholas H Oberlies; Fernanda M M Ocampos; Guohui Pan; Ronald J Quinn; D Sai Reddy; Jean-Hugues Renault; José Rivera-Chávez; Wolfgang Robien; Carla M Saunders; Thomas J Schmidt; Christoph Seger; Ben Shen; Christoph Steinbeck; Hermann Stuppner; Sonja Sturm; Orazio Taglialatela-Scafati; Dean J Tantillo; Robert Verpoorte; Bin-Gui Wang; Craig M Williams; Philip G Williams; Julien Wist; Jian-Min Yue; Chen Zhang; Zhengren Xu; Charlotte Simmler; David C Lankin; Jonathan Bisson; Guido F Pauli
Journal:  Nat Prod Rep       Date:  2018-07-13       Impact factor: 13.423

9.  A new method for the comparison of 1H NMR predictors based on tree-similarity of spectra.

Authors:  Andrés M Castillo; Andrés Bernal; Luc Patiny; Julien Wist
Journal:  J Cheminform       Date:  2014-03-25       Impact factor: 5.514

10.  IMPRESSION - prediction of NMR parameters for 3-dimensional chemical structures using machine learning with near quantum chemical accuracy.

Authors:  Will Gerrard; Lars A Bratholm; Martin J Packer; Adrian J Mulholland; David R Glowacki; Craig P Butts
Journal:  Chem Sci       Date:  2019-11-20       Impact factor: 9.825

  10 in total

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