Literature DB >> 17949206

Energies of ions in water and nanopores within density functional theory.

Kevin Leung1, Martijn Marsman.   

Abstract

Accurate calculations of electrostatic potentials and treatment of substrate polarizability are critical for predicting the permeation of ions inside water-filled nanopores. The ab initio molecular dynamics method, based on density functional theory (DFT), accounts for the polarizability of materials, water, and solutes, and it should be the method of choice for predicting accurate electrostatic energies of ions. In practice, DFT coupled with the use of periodic boundary conditions in a charged system leads to large energy shifts. Results obtained using different DFT packages may vary because of the way pseudopotentials and long-range electrostatics are implemented. Using maximally localized Wannier functions, we apply robust corrections that yield relatively unambiguous ion energies in select molecular and aqueous systems and inside carbon nanotubes. Large binding energies are predicted for ions in metallic carbon nanotube arrays, while Na+ and Cl- energies are found to exhibit asymmetry in water that is smaller than but comparable with those computed using nonpolarizable water force fields.

Entities:  

Year:  2007        PMID: 17949206     DOI: 10.1063/1.2772244

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Multibody effects in ion binding and selectivity.

Authors:  Sameer Varma; Susan B Rempe
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

2.  Ion Rejection by Nanoporous Membranes in Pressure-Driven Molecular Dynamics Simulations.

Authors:  Kevin Leung; Susan B Rempe
Journal:  J Comput Theor Nanosci       Date:  2009-08-01

3.  Deep neural network based quantum simulations and quasichemical theory for accurate modeling of molten salt thermodynamics.

Authors:  Yu Shi; Stephen T Lam; Thomas L Beck
Journal:  Chem Sci       Date:  2022-06-15       Impact factor: 9.969

4.  Influence of effective polarization on ion and water interactions within a biomimetic nanopore.

Authors:  Linda X Phan; Charlotte I Lynch; Jason Crain; Mark S P Sansom; Stephen J Tucker
Journal:  Biophys J       Date:  2022-05-07       Impact factor: 3.699

  4 in total

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