Literature DB >> 17946779

A data-driven computational model of the ErbB receptor signaling network.

Birgit Schoeberl1, Emily Pace, Shavonne Howard, Viara Garantcharova, Art Kudla, Peter K Sorger, Ulrik B Nielsen.   

Abstract

Signal transduction networks are often described by qualitative models that incorporate experimental findings from different cell types. However, a large body of evidence suggests that cell signaling differs substantially from one cell type to the next. Even in cases in which the topology of signaling networks is conserved, different cell types respond differently under the same experimental conditions. In this work we address the problem of developing quantitative and cell-type specific models of cells signaling that incorporate experimental data obtained from protein arrays and mathematical modeling. As a biological system we examine signaling mediated ErbB receptor family as the current literature is very controversial.

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Year:  2006        PMID: 17946779     DOI: 10.1109/IEMBS.2006.259754

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  7 in total

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Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2011-09-02

2.  Disentangling ERBB Signaling in Breast Cancer Subtypes-A Model-Based Analysis.

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Journal:  Cancers (Basel)       Date:  2022-05-12       Impact factor: 6.575

3.  Network Architecture Predisposes an Enzyme to Either Pharmacologic or Genetic Targeting.

Authors:  Karin J Jensen; Christian B Moyer; Kevin A Janes
Journal:  Cell Syst       Date:  2016-02-24       Impact factor: 10.304

Review 4.  Multi-scale Modeling in Clinical Oncology: Opportunities and Barriers to Success.

Authors:  Thomas E Yankeelov; Gary An; Oliver Saut; E Georg Luebeck; Aleksander S Popel; Benjamin Ribba; Paolo Vicini; Xiaobo Zhou; Jared A Weis; Kaiming Ye; Guy M Genin
Journal:  Ann Biomed Eng       Date:  2016-07-06       Impact factor: 3.934

5.  Functional aspects of the EGF-induced MAP kinase cascade: a complex self-organizing system approach.

Authors:  Efstratios K Kosmidis; Vasiliki Moschou; Georgios Ziogas; Ioannis Boukovinas; Maria Albani; Nikolaos A Laskaris
Journal:  PLoS One       Date:  2014-11-05       Impact factor: 3.240

6.  Computational investigation of sphingosine kinase 1 (SphK1) and calcium dependent ERK1/2 activation downstream of VEGFR2 in endothelial cells.

Authors:  Hojjat Bazzazi; Aleksander S Popel
Journal:  PLoS Comput Biol       Date:  2017-02-08       Impact factor: 4.475

7.  Predicting ligand-dependent tumors from multi-dimensional signaling features.

Authors:  Helge Hass; Kristina Masson; Sibylle Wohlgemuth; Violette Paragas; John E Allen; Mark Sevecka; Emily Pace; Jens Timmer; Joerg Stelling; Gavin MacBeath; Birgit Schoeberl; Andreas Raue
Journal:  NPJ Syst Biol Appl       Date:  2017-09-20
  7 in total

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