Literature DB >> 17942745

Stimulation of picornavirus replication by the poly(A) tail in a cell-free extract is largely independent of the poly(A) binding protein (PABP).

Yuri V Svitkin1, Mauro Costa-Mattioli, Barbara Herdy, Sandra Perreault, Nahum Sonenberg.   

Abstract

Picornavirus infectivity is dependent on the RNA poly(A) tail, which binds the poly(A) binding protein (PABP). PABP was reported to stimulate viral translation and RNA synthesis. Here, we studied encephalomyocarditis virus (EMCV) and poliovirus (PV) genome expression in Krebs-2 and HeLa cell-free extracts that were drastically depleted of PABP (96%-99%). Although PABP depletion markedly diminished EMCV and PV internal ribosome entry site (IRES)-mediated translation of a polyadenylated luciferase mRNA, it displayed either no (EMCV) or slight (PV) deleterious effect on the translation of the full-length viral RNAs. Moreover, PABP-depleted extracts were fully competent in supporting EMCV and PV RNA replication and virus assembly. In contrast, removing the poly(A) tail from EMCV RNA dramatically reduced RNA synthesis and virus yields in cell-free reactions. The advantage conferred by the poly(A) tail to EMCV synthesis was more pronounced in untreated than in nuclease-treated extract, indicating that endogenous cellular mRNAs compete with the viral RNA for a component(s) of the RNA replication machinery. These results suggest that the poly(A) tail functions in picornavirus replication largely independent of PABP.

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Year:  2007        PMID: 17942745      PMCID: PMC2080607          DOI: 10.1261/rna.606407

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  56 in total

1.  Identification of a cis-acting replication element within the poliovirus coding region.

Authors:  I Goodfellow; Y Chaudhry; A Richardson; J Meredith; J W Almond; W Barclay; D J Evans
Journal:  J Virol       Date:  2000-05       Impact factor: 5.103

2.  Identification of an RNA hairpin in poliovirus RNA that serves as the primary template in the in vitro uridylylation of VPg.

Authors:  A V Paul; E Rieder; D W Kim; J H van Boom; E Wimmer
Journal:  J Virol       Date:  2000-11       Impact factor: 5.103

3.  2Apro is a multifunctional protein that regulates the stability, translation and replication of poliovirus RNA.

Authors:  Christy K Jurgens; David J Barton; Nidhi Sharma; B Joan Morasco; Sushma A Ogram; James B Flanegan
Journal:  Virology       Date:  2005-11-17       Impact factor: 3.616

4.  Eukaryotic translation initiation factor 4E availability controls the switch between cap-dependent and internal ribosomal entry site-mediated translation.

Authors:  Yuri V Svitkin; Barbara Herdy; Mauro Costa-Mattioli; Anne-Claude Gingras; Brian Raught; Nahum Sonenberg
Journal:  Mol Cell Biol       Date:  2005-12       Impact factor: 4.272

5.  Picornavirus IRESes and the poly(A) tail jointly promote cap-independent translation in a mammalian cell-free system.

Authors:  G Bergamini; T Preiss; M W Hentze
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

6.  Poly(A) binding protein (PABP) homeostasis is mediated by the stability of its inhibitor, Paip2.

Authors:  Madoka Yoshida; Kaori Yoshida; Guennadi Kozlov; Nadia S Lim; Gregory De Crescenzo; Zhiyu Pang; Juan Jose Berlanga; Avak Kahvejian; Kalle Gehring; Simon S Wing; Nahum Sonenberg
Journal:  EMBO J       Date:  2006-04-06       Impact factor: 11.598

7.  Differential utilization of poly(rC) binding protein 2 in translation directed by picornavirus IRES elements.

Authors:  B L Walter; J H Nguyen; E Ehrenfeld; B L Semler
Journal:  RNA       Date:  1999-12       Impact factor: 4.942

8.  Translational repression by a novel partner of human poly(A) binding protein, Paip2.

Authors:  K Khaleghpour; Y V Svitkin; A W Craig; C T DeMaria; R C Deo; S K Burley; N Sonenberg
Journal:  Mol Cell       Date:  2001-01       Impact factor: 17.970

9.  A highly efficient and robust in vitro translation system for expression of picornavirus and hepatitis C virus RNA genomes.

Authors:  Yuri V Svitkin; Nahum Sonenberg
Journal:  Methods Enzymol       Date:  2007       Impact factor: 1.600

10.  Polyadenylation of genomic RNA and initiation of antigenomic RNA in a positive-strand RNA virus are controlled by the same cis-element.

Authors:  Mark J M van Ooij; Charlotta Polacek; Dirk H R F Glaudemans; Judith Kuijpers; Frank J M van Kuppeveld; Raul Andino; Vadim I Agol; Willem J G Melchers
Journal:  Nucleic Acids Res       Date:  2006-05-31       Impact factor: 16.971

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  16 in total

1.  Activity-Based Protein Profiling Identifies ATG4B as a Key Host Factor for Enterovirus 71 Proliferation.

Authors:  Yang Sun; Qizhen Zheng; Yaxin Wang; Zhengyuan Pang; Jingwei Liu; Zheng Yin; Zhiyong Lou
Journal:  J Virol       Date:  2019-11-26       Impact factor: 5.103

2.  Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition.

Authors:  Tracy Nissan; Roy Parker
Journal:  RNA       Date:  2008-06-25       Impact factor: 4.942

3.  Poly(A) at the 3' end of positive-strand RNA and VPg-linked poly(U) at the 5' end of negative-strand RNA are reciprocal templates during replication of poliovirus RNA.

Authors:  Benjamin P Steil; Brian J Kempf; David J Barton
Journal:  J Virol       Date:  2010-01-13       Impact factor: 5.103

4.  Site-specific cleavage of the host poly(A) binding protein by the encephalomyocarditis virus 3C proteinase stimulates viral replication.

Authors:  Mariko Kobayashi; Carolina Arias; Alexandra Garabedian; Ann C Palmenberg; Ian Mohr
Journal:  J Virol       Date:  2012-07-25       Impact factor: 5.103

5.  Cleavage of poly(A)-binding protein by poliovirus 3C proteinase inhibits viral internal ribosome entry site-mediated translation.

Authors:  Jennifer M Bonderoff; Jennifer L Larey; Richard E Lloyd
Journal:  J Virol       Date:  2008-07-16       Impact factor: 5.103

6.  Re-localization of cellular protein SRp20 during poliovirus infection: bridging a viral IRES to the host cell translation apparatus.

Authors:  Kerry D Fitzgerald; Bert L Semler
Journal:  PLoS Pathog       Date:  2011-07-14       Impact factor: 6.823

Review 7.  Picornavirus RNA polyadenylation by 3D(pol), the viral RNA-dependent RNA polymerase.

Authors:  Brian J Kempf; David J Barton
Journal:  Virus Res       Date:  2015-01-03       Impact factor: 3.303

8.  The Functional Role of the 3' Untranslated Region and Poly(A) Tail of Duck Hepatitis A Virus Type 1 in Viral Replication and Regulation of IRES-Mediated Translation.

Authors:  Jun-Hao Chen; Rui-Hua Zhang; Shao-Li Lin; Peng-Fei Li; Jing-Jing Lan; Sha-Sha Song; Ji-Ming Gao; Yu Wang; Zhi-Jing Xie; Fu-Chang Li; Shi-Jin Jiang
Journal:  Front Microbiol       Date:  2018-09-25       Impact factor: 5.640

9.  Picornavirus modification of a host mRNA decay protein.

Authors:  Janet M Rozovics; Amanda J Chase; Andrea L Cathcart; Wayne Chou; Paul D Gershon; Saiprasad Palusa; Jeffrey Wilusz; Bert L Semler
Journal:  mBio       Date:  2012-11-06       Impact factor: 7.867

10.  The impact of RNA structure on picornavirus IRES activity.

Authors:  Encarnación Martínez-Salas
Journal:  Trends Microbiol       Date:  2008-04-15       Impact factor: 17.079

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