Literature DB >> 17942697

Optimally wired subnetwork determines neuroanatomy of Caenorhabditis elegans.

Alfonso Pérez-Escudero1, Gonzalo G de Polavieja.   

Abstract

Wiring cost minimization has successfully explained many structures of nervous systems. However, in the nematode Caenorhabditis elegans, for which anatomical data are most detailed, wiring economy is thought to play only a partial role and alone has failed to account for the grouping of neurons into ganglia [Chen BL, Hall DH, Chklovskii DB (2006) Proc Natl Acad Sci USA 103:4723-4728; Kaiser M, Hilgetag CC (2006) PLoS Comput Biol 2:e95; Ahn Y-Y, Jeong H, Kim BJ (2006) Physica A 367:531-537]. Here, we test the hypothesis that optimally wired subnetworks can exist within nonoptimal networks, thus allowing wiring economy to give an improved prediction of spatial structure. We show in C. elegans that the small subnetwork of wires connecting sensory and motor neurons with sensors and muscles, comprising only 15% of connections, is close to optimal and alone predicts the main features of the spatial segregation of neurons into ganglia and encephalization. Moreover, a method to dissect networks into optimal and nonoptimal components is shown to find a large near-optimal subnetwork of 84% of neurons with a very low position error of 5.4%, and that explains clustering of neurons into ganglia and encephalization to fine detail. In general, we expect realistic networks not to be globally optimal in wire cost. We thus propose the strategy of using near-optimal subnetworks to understand neuroanatomical structure.

Entities:  

Mesh:

Year:  2007        PMID: 17942697      PMCID: PMC2040432          DOI: 10.1073/pnas.0703183104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

Review 1.  The roles of co-transmission in neural network modulation.

Authors:  M P Nusbaum; D M Blitz; A M Swensen; D Wood; E Marder
Journal:  Trends Neurosci       Date:  2001-03       Impact factor: 13.837

2.  Large-scale optimization of neuron arbors.

Authors:  C Cherniak; M Changizi; D Kang
Journal:  Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics       Date:  1999-05

3.  Exact solution for the optimal neuronal layout problem.

Authors:  Dmitri B Chklovskii
Journal:  Neural Comput       Date:  2004-10       Impact factor: 2.026

4.  Local optimization of neuron arbors.

Authors:  C Cherniak
Journal:  Biol Cybern       Date:  1992       Impact factor: 2.086

5.  Brain maps and parallel computers.

Authors:  M E Nelson; J M Bower
Journal:  Trends Neurosci       Date:  1990-10       Impact factor: 13.837

6.  A theory of the effects of fibre size in medullated nerve.

Authors:  W A H RUSHTON
Journal:  J Physiol       Date:  1951-09       Impact factor: 5.182

7.  A dimension reduction framework for understanding cortical maps.

Authors:  R Durbin; G Mitchison
Journal:  Nature       Date:  1990-02-15       Impact factor: 49.962

8.  The posterior nervous system of the nematode Caenorhabditis elegans: serial reconstruction of identified neurons and complete pattern of synaptic interactions.

Authors:  D H Hall; R L Russell
Journal:  J Neurosci       Date:  1991-01       Impact factor: 6.167

9.  The connectivity of the brain: multi-level quantitative analysis.

Authors:  J M Murre; D P Sturdy
Journal:  Biol Cybern       Date:  1995-11       Impact factor: 2.086

10.  Power-law for axon diameters at branch point.

Authors:  Dmitri B Chklovskii; Armen Stepanyants
Journal:  BMC Neurosci       Date:  2003-08-28       Impact factor: 3.288

View more
  18 in total

Review 1.  The economy of brain network organization.

Authors:  Ed Bullmore; Olaf Sporns
Journal:  Nat Rev Neurosci       Date:  2012-04-13       Impact factor: 34.870

2.  Structure of deviations from optimality in biological systems.

Authors:  Alfonso Pérez-Escudero; Marta Rivera-Alba; Gonzalo G de Polavieja
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-16       Impact factor: 11.205

Review 3.  Micro-connectomics: probing the organization of neuronal networks at the cellular scale.

Authors:  Manuel Schröter; Ole Paulsen; Edward T Bullmore
Journal:  Nat Rev Neurosci       Date:  2017-02-02       Impact factor: 34.870

4.  Structural optimality and neurogenetic expression mediate functional dynamics in the human brain.

Authors:  Ioannis Pappas; Michael M Craig; David K Menon; Emmanuel A Stamatakis
Journal:  Hum Brain Mapp       Date:  2020-02-06       Impact factor: 5.038

5.  Mesoscopic organization reveals the constraints governing Caenorhabditis elegans nervous system.

Authors:  Raj Kumar Pan; Nivedita Chatterjee; Sitabhra Sinha
Journal:  PLoS One       Date:  2010-02-22       Impact factor: 3.240

6.  Developmental trajectory of Caenorhabditis elegans nervous system governs its structural organization.

Authors:  Anand Pathak; Nivedita Chatterjee; Sitabhra Sinha
Journal:  PLoS Comput Biol       Date:  2020-01-02       Impact factor: 4.475

7.  Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain.

Authors:  Marta Rivera-Alba; Shiv N Vitaladevuni; Yuriy Mishchenko; Yuriy Mischenko; Zhiyuan Lu; Shin-Ya Takemura; Lou Scheffer; Ian A Meinertzhagen; Dmitri B Chklovskii; Gonzalo G de Polavieja
Journal:  Curr Biol       Date:  2011-11-23       Impact factor: 10.834

8.  Wiring cost and topological participation of the mouse brain connectome.

Authors:  Mikail Rubinov; Rolf J F Ypma; Charles Watson; Edward T Bullmore
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

9.  Phase transition in the economically modeled growth of a cellular nervous system.

Authors:  Vincenzo Nicosia; Petra E Vértes; William R Schafer; Vito Latora; Edward T Bullmore
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

10.  The interscutularis muscle connectome.

Authors:  Ju Lu; Juan Carlos Tapia; Olivia L White; Jeff W Lichtman
Journal:  PLoS Biol       Date:  2009-02-10       Impact factor: 8.029

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.