Literature DB >> 17942178

Development of a sensitive radiorespiration method for detecting microbial activity at subzero temperatures.

Blaire Steven1, Thomas D Niederberger, Eric M Bottos, Michael R Dyen, Lyle G Whyte.   

Abstract

We have developed a simple and sensitive method to detect microbial respiration at subzero temperatures. Microbial activity was detected by measuring (14)CO(2) evolved during the microbial-mediated mineralization of [1-(14)C] acetic acid or [2-(14)C] glucose in microcosm assays using modified (14)CO(2) traps. Various (14)CO(2) traps, designed to withstand freezing at subzero temperatures, were tested for their quench characteristics during liquid scintillation spectrometry and their ability to trap (14)CO(2). Solutions consisting of 1 M KOH supplemented with 20% or 30% v/v ethylene glycol did not freeze at temperatures above -20 degrees C and had a minor quenching effect on liquid scintillation spectrometry. Addition of ethylene glycol did have an effect on the efficiency of (14)CO(2) trapping, as the cumulative recovery of (14)CO(2) was reduced by 14% and 32% in the 1 M KOH+20% ethylene glycol and 1 M KOH+30% ethylene glycol solutions, respectively. Using the modified (14)CO(2) traps, microbial activity in representative Canadian high Arctic environmental samples was detected at temperatures as low as -15 degrees C. This simple method allows for sensitive, specific, and reliable detection of microbial activity occurring at subzero temperatures and is readily adaptable for studies in other cryoenvironments.

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Year:  2007        PMID: 17942178     DOI: 10.1016/j.mimet.2007.09.009

Source DB:  PubMed          Journal:  J Microbiol Methods        ISSN: 0167-7012            Impact factor:   2.363


  12 in total

1.  Microbial diversity and activity in hypersaline high Arctic spring channels.

Authors:  Chih-Ying Lay; Nadia C S Mykytczuk; Thomas D Niederberger; Christine Martineau; Charles W Greer; Lyle G Whyte
Journal:  Extremophiles       Date:  2012-01-14       Impact factor: 2.395

2.  Identification of nitrogen-incorporating bacteria in petroleum-contaminated arctic soils by using [15N]DNA-based stable isotope probing and pyrosequencing.

Authors:  Terrence H Bell; Etienne Yergeau; Christine Martineau; David Juck; Lyle G Whyte; Charles W Greer
Journal:  Appl Environ Microbiol       Date:  2011-04-15       Impact factor: 4.792

Review 3.  The microbial ecology of permafrost.

Authors:  Janet K Jansson; Neslihan Taş
Journal:  Nat Rev Microbiol       Date:  2014-05-12       Impact factor: 60.633

4.  Evidence of in situ microbial activity and sulphidogenesis in perennially sub-0 °C and hypersaline sediments of a high Arctic permafrost spring.

Authors:  Guillaume Lamarche-Gagnon; Raven Comery; Charles W Greer; Lyle G Whyte
Journal:  Extremophiles       Date:  2014-11-09       Impact factor: 2.395

5.  Bacterial growth at -15 °C; molecular insights from the permafrost bacterium Planococcus halocryophilus Or1.

Authors:  Nadia C S Mykytczuk; Simon J Foote; Chris R Omelon; Gordon Southam; Charles W Greer; Lyle G Whyte
Journal:  ISME J       Date:  2013-02-07       Impact factor: 10.302

6.  Defining the functional potential and active community members of a sediment microbial community in a high-arctic hypersaline subzero spring.

Authors:  Chih-Ying Lay; Nadia C S Mykytczuk; Étienne Yergeau; Guillaume Lamarche-Gagnon; Charles W Greer; Lyle G Whyte
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

7.  Colonization patterns of soil microbial communities in the Atacama Desert.

Authors:  Alexander Crits-Christoph; Courtney K Robinson; Tyler Barnum; W Florian Fricke; Alfonso F Davila; Bruno Jedynak; Christopher P McKay; Jocelyne Diruggiero
Journal:  Microbiome       Date:  2013-11-20       Impact factor: 14.650

8.  Actinorhizal Alder Phytostabilization Alters Microbial Community Dynamics in Gold Mine Waste Rock from Northern Quebec: A Greenhouse Study.

Authors:  Katrina L Callender; Sébastien Roy; Damase P Khasa; Lyle G Whyte; Charles W Greer
Journal:  PLoS One       Date:  2016-02-29       Impact factor: 3.240

9.  Nearing the cold-arid limits of microbial life in permafrost of an upper dry valley, Antarctica.

Authors:  Jacqueline Goordial; Alfonso Davila; Denis Lacelle; Wayne Pollard; Margarita M Marinova; Charles W Greer; Jocelyn DiRuggiero; Christopher P McKay; Lyle G Whyte
Journal:  ISME J       Date:  2016-01-19       Impact factor: 10.302

10.  Microbial competition in polar soils: a review of an understudied but potentially important control on productivity.

Authors:  Terrence H Bell; Katrina L Callender; Lyle G Whyte; Charles W Greer
Journal:  Biology (Basel)       Date:  2013-03-27
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