Literature DB >> 17940052

Diffusion-controlled metabolism for long-term survival of single isolated microorganisms trapped within ice crystals.

Robert A Rohde1, P Buford Price.   

Abstract

Two known habitats for microbial metabolism in ice are surfaces of mineral grains and liquid veins along three-grain boundaries. We propose a third, more general, habitat in which a microbe frozen in ice can metabolize by redox reactions with dissolved small molecules such as CO(2), O(2), N(2), CO, and CH(4) diffusing through the ice lattice. We show that there is an adequate supply of diffusing molecules throughout deep glacial ice to sustain metabolism for >10(5) yr. Using scanning fluorimetry to map proteins (a proxy for cells) and F420 (a proxy for methanogens) in ice cores, we find isolated spikes of fluorescence with intensity consistent with as few as one microbial cell in a volume of 0.16 microl with the protein mapper and in 1.9 microl with the methanogen mapper. With such precise localization, it should be possible to extract single cells for molecular identification.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17940052      PMCID: PMC2034245          DOI: 10.1073/pnas.0708183104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Microorganisms in the accreted ice of Lake Vostok, Antarctica.

Authors:  D M Karl; D F Bird; K Björkman; T Houlihan; R Shackelford; L Tupas
Journal:  Science       Date:  1999-12-10       Impact factor: 47.728

2.  Diversity of Holocene life forms in fossil glacier ice.

Authors:  E Willerslev; A J Hansen; B Christensen; J P Steffensen; P Arctander
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-06       Impact factor: 11.205

3.  Phylogenetic analysis of anaerobic psychrophilic enrichment cultures obtained from a greenland glacier ice core.

Authors:  Peter P Sheridan; Vanya I Miteva; Jean E Brenchley
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

4.  Temperature dependence of metabolic rates for microbial growth, maintenance, and survival.

Authors:  P Buford Price; Todd Sowers
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-30       Impact factor: 11.205

5.  Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth.

Authors:  Yann Marcy; Cleber Ouverney; Elisabeth M Bik; Tina Lösekann; Natalia Ivanova; Hector Garcia Martin; Ernest Szeto; Darren Platt; Philip Hugenholtz; David A Relman; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-09       Impact factor: 11.205

6.  Clathrate hydrates of air in antarctic ice.

Authors:  S L Miller
Journal:  Science       Date:  1969-08-01       Impact factor: 47.728

7.  Isolation and characterization of the iron-containing superoxide dismutase of Methanobacterium bryantii.

Authors:  T W Kirby; J R Lancaster; I Fridovich
Journal:  Arch Biochem Biophys       Date:  1981-08       Impact factor: 4.013

8.  New method for the isolation and identification of methanogenic bacteria.

Authors:  T Edwards; B C McBride
Journal:  Appl Microbiol       Date:  1975-04

9.  Survival, physiological response and recovery of enteric bacteria exposed to a polar marine environment.

Authors:  J J Smith; J P Howington; G A McFeters
Journal:  Appl Environ Microbiol       Date:  1994-08       Impact factor: 4.792

10.  Rapid Variations in Atmospheric Methane Concentration During the Past 110,000 Years

Authors: 
Journal:  Science       Date:  1996-08-23       Impact factor: 47.728

View more
  15 in total

1.  Energy metabolism response to low-temperature and frozen conditions in Psychrobacter cryohalolentis.

Authors:  Pierre Amato; Brent C Christner
Journal:  Appl Environ Microbiol       Date:  2008-12-05       Impact factor: 4.792

2.  In situ microbial metabolism as a cause of gas anomalies in ice.

Authors:  Robert A Rohde; P Buford Price; Ryan C Bay; Nathan E Bramall
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-12       Impact factor: 11.205

3.  Cultivation and characterization of snowbound microorganisms from the South Pole.

Authors:  Mackenzie K Hayward; Emma D Dewey; Kathryn N Shaffer; Austin M Huntington; Brad M Burchell; Lynn M Stokes; Brittney C Alexander; Janessa E George; Megan L Kempher; Samantha B Joye; Michael T Madigan; W Matthew Sattley
Journal:  Extremophiles       Date:  2021-02-15       Impact factor: 2.395

4.  The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth.

Authors:  Héctor L Ayala-del-Río; Patrick S Chain; Joseph J Grzymski; Monica A Ponder; Natalia Ivanova; Peter W Bergholz; Genevive Di Bartolo; Loren Hauser; Miriam Land; Corien Bakermans; Debora Rodrigues; Joel Klappenbach; Dan Zarka; Frank Larimer; Paul Richardson; Alison Murray; Michael Thomashow; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2010-02-12       Impact factor: 4.792

5.  Bacterial lipoteichoic acid enhances cryosurvival.

Authors:  Charles V Rice; Amy Middaugh; Jason R Wickham; Anthony Friedline; Kieth J Thomas; Erin Scull; Karen Johnson; Malcolm Zachariah; Ravindranth Garimella
Journal:  Extremophiles       Date:  2014-12-05       Impact factor: 2.395

Review 6.  Physiology, Biochemistry, and Applications of F420- and Fo-Dependent Redox Reactions.

Authors:  Chris Greening; F Hafna Ahmed; A Elaaf Mohamed; Brendon M Lee; Gunjan Pandey; Andrew C Warden; Colin Scott; John G Oakeshott; Matthew C Taylor; Colin J Jackson
Journal:  Microbiol Mol Biol Rev       Date:  2016-04-27       Impact factor: 11.056

7.  Glacier ice archives nearly 15,000-year-old microbes and phages.

Authors:  Zhi-Ping Zhong; Funing Tian; Simon Roux; M Consuelo Gazitúa; Natalie E Solonenko; Yueh-Fen Li; Mary E Davis; James L Van Etten; Ellen Mosley-Thompson; Virginia I Rich; Matthew B Sullivan; Lonnie G Thompson
Journal:  Microbiome       Date:  2021-07-20       Impact factor: 14.650

8.  Use of NanoSIMS to Identify the Lower Limits of Metabolic Activity and Growth by Serratia liquefaciens Exposed to Sub-Zero Temperatures.

Authors:  Petra Schwendner; Ann N Nguyen; Andrew C Schuerger
Journal:  Life (Basel)       Date:  2021-05-20

9.  δ(13)C-CH4 reveals CH4 variations over oceans from mid-latitudes to the Arctic.

Authors:  Juan Yu; Zhouqing Xie; Liguang Sun; Hui Kang; Pengzhen He; Guangxi Xing
Journal:  Sci Rep       Date:  2015-09-01       Impact factor: 4.379

10.  Fluorescence characterization of clinically-important bacteria.

Authors:  Lewis R Dartnell; Tom A Roberts; Ginny Moore; John M Ward; Jan-Peter Muller
Journal:  PLoS One       Date:  2013-09-30       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.