Literature DB >> 17933510

Crop evolution: from genetics to genomics.

John M Burke1, Jutta C Burger, Mark A Chapman.   

Abstract

The advent of the genomics age has greatly facilitated the study of crop evolution. While full-scale genome sequencing projects are underway for just a handful of crop plants, recent years have witnessed a tremendous increase in the availability of DNA sequence data for virtually all major crops. Such resources have bolstered 'traditional' genetic approaches such as QTL mapping and candidate gene-based association studies. They have also allowed us to undertake genome-wide analyses in which we simultaneously consider the importance of a large and essentially random collection of genes. These sorts of analyses promise a more or less unbiased view of the genetic basis of crop evolution and will probably result in the identification of agronomically important genes that would have otherwise been overlooked.

Mesh:

Year:  2007        PMID: 17933510     DOI: 10.1016/j.gde.2007.09.003

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  34 in total

1.  Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium).

Authors:  Ying Bao; Guanjing Hu; Lex E Flagel; Armel Salmon; Magdalena Bezanilla; Andrew H Paterson; Zining Wang; Jonathan F Wendel
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-12       Impact factor: 11.205

2.  Variation under domestication in plants: 1859 and today.

Authors:  Anthony H D Brown
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-08-27       Impact factor: 6.237

3.  Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.).

Authors:  Guanjing Hu; Jin Koh; Mi-Jeong Yoo; Dharminder Pathak; Sixue Chen; Jonathan F Wendel
Journal:  Planta       Date:  2014-08-26       Impact factor: 4.116

Review 4.  Stoichiogenomics: the evolutionary ecology of macromolecular elemental composition.

Authors:  James J Elser; Claudia Acquisti; Sudhir Kumar
Journal:  Trends Ecol Evol       Date:  2010-11-18       Impact factor: 17.712

Review 5.  The nature of selection during plant domestication.

Authors:  Michael D Purugganan; Dorian Q Fuller
Journal:  Nature       Date:  2009-02-12       Impact factor: 49.962

6.  Multiple lines of evidence for the origin of domesticated chili pepper, Capsicum annuum, in Mexico.

Authors:  Kraig H Kraft; Cecil H Brown; Gary P Nabhan; Eike Luedeling; José de Jesús Luna Ruiz; Geo Coppens d'Eeckenbrugge; Robert J Hijmans; Paul Gepts
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

7.  Tinkering with the C-function: a molecular frame for the selection of double flowers in cultivated roses.

Authors:  Annick Dubois; Olivier Raymond; Marion Maene; Sylvie Baudino; Nicolas B Langlade; Véronique Boltz; Philippe Vergne; Mohammed Bendahmane
Journal:  PLoS One       Date:  2010-02-18       Impact factor: 3.240

8.  Advances in genetical genomics of plants.

Authors:  R V L Joosen; W Ligterink; H W M Hilhorst; J J B Keurentjes
Journal:  Curr Genomics       Date:  2009-12       Impact factor: 2.236

9.  Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication.

Authors:  Ryan A Rapp; Candace H Haigler; Lex Flagel; Ran H Hovav; Joshua A Udall; Jonathan F Wendel
Journal:  BMC Biol       Date:  2010-11-15       Impact factor: 7.431

10.  The genetics of domestication of rice bean, Vigna umbellata.

Authors:  Takehisa Isemura; Akito Kaga; Norihiko Tomooka; Takehiko Shimizu; Duncan Alexander Vaughan
Journal:  Ann Bot       Date:  2010-09-29       Impact factor: 4.357

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