Literature DB >> 17930726

Multistability and clustering in a population of synthetic genetic oscillators via phase-repulsive cell-to-cell communication.

Ekkehard Ullner1, Alexei Zaikin, Evgenii I Volkov, Jordi García-Ojalvo.   

Abstract

We show that phase-repulsive coupling eliminates oscillations in a population of synthetic genetic clocks. For this, we propose an experimentally feasible synthetic genetic network that contains phase repulsively coupled repressilators with broken temporal symmetry. As the coupling strength increases, silencing of oscillations is found to occur via the appearance of an inhomogeneous limit cycle, followed by oscillation death. Two types of oscillation death are observed: For lower couplings, the cells cluster in one of two stationary states of protein expression; for larger couplings, all cells end up in a single (stationary) cellular state. Several multistable regimes are observed along this route to oscillation death.

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Mesh:

Year:  2007        PMID: 17930726     DOI: 10.1103/PhysRevLett.99.148103

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  21 in total

Review 1.  A comparative analysis of synthetic genetic oscillators.

Authors:  Oliver Purcell; Nigel J Savery; Claire S Grierson; Mario di Bernardo
Journal:  J R Soc Interface       Date:  2010-06-30       Impact factor: 4.118

Review 2.  Cell signaling as a cognitive process.

Authors:  Aneta Koseska; Philippe Ih Bastiaens
Journal:  EMBO J       Date:  2017-01-30       Impact factor: 11.598

3.  Modelling emergence of oscillations in communicating bacteria: a structured approach from one to many cells.

Authors:  Petros Mina; Mario di Bernardo; Nigel J Savery; Krasimira Tsaneva-Atanasova
Journal:  J R Soc Interface       Date:  2013-01-06       Impact factor: 4.118

Review 4.  Approaching the molecular origins of collective dynamics in oscillating cell populations.

Authors:  Pankaj Mehta; Thomas Gregor
Journal:  Curr Opin Genet Dev       Date:  2010-10-09       Impact factor: 5.578

5.  Microfluidic oscillators with widely tunable periods.

Authors:  Sung-Jin Kim; Ryuji Yokokawa; Shuichi Takayama
Journal:  Lab Chip       Date:  2013-04-21       Impact factor: 6.799

6.  Electronic implementation of a repressilator with quorum sensing feedback.

Authors:  Edward H Hellen; Syamal K Dana; Boris Zhurov; Evgeny Volkov
Journal:  PLoS One       Date:  2013-05-02       Impact factor: 3.240

7.  An electronic analog of synthetic genetic networks.

Authors:  Edward H Hellen; Evgenii Volkov; Jurgen Kurths; Syamal Kumar Dana
Journal:  PLoS One       Date:  2011-08-04       Impact factor: 3.240

8.  Oscillatory protein expression dynamics endows stem cells with robust differentiation potential.

Authors:  Narito Suzuki; Chikara Furusawa; Kunihiko Kaneko
Journal:  PLoS One       Date:  2011-11-03       Impact factor: 3.240

9.  Interplay between path and speed in decision making by high-dimensional stochastic gene regulatory networks.

Authors:  Nuno R Nené; Alexey Zaikin
Journal:  PLoS One       Date:  2012-07-16       Impact factor: 3.240

10.  Modelling and analysing biological oscillations in quorum sensing networks.

Authors:  Menghan Chen; Haihong Liu; Fang Yan
Journal:  IET Syst Biol       Date:  2020-08       Impact factor: 1.615

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