Literature DB >> 17930363

Embedding molecular dynamics within fluctuating hydrodynamics in multiscale simulations of liquids.

R Delgado-Buscalioni1, G De Fabritiis.   

Abstract

We present a hybrid protocol designed to couple the dynamics of a nanoscopic region of liquid described at atomistic level with a fluctuating hydrodynamics description of the surrounding liquid. The hybrid technique is based on the exchange of fluxes and it is shown to respect the conservation laws of fluid mechanics. This fact allows us to solve unsteady flows involving shear and sound waves crossing the interface of both domains. In equilibrium we find perfect agreement with the grand-canonical ensemble at low and moderate densities, while within the nanoscopic volumes considered, mass fluctuation (both in hybrid and full MD simulations) becomes slightly larger than predicted by the thermodynamic limit. Stress fluctuations across the hybrid interface are shown to have a seamless profile. Nonequilibrium scenarios involving shear (startup of Couette flow) and longitudinal flow (sound waves) are also illustrated.

Year:  2007        PMID: 17930363     DOI: 10.1103/PhysRevE.76.036709

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  Open-Boundary Molecular Dynamics of a DNA Molecule in a Hybrid Explicit/Implicit Salt Solution.

Authors:  Julija Zavadlav; Jurij Sablić; Rudolf Podgornik; Matej Praprotnik
Journal:  Biophys J       Date:  2018-04-09       Impact factor: 4.033

2.  Hybrid molecular-continuum simulations using smoothed dissipative particle dynamics.

Authors:  Nikolai D Petsev; L Gary Leal; M Scott Shell
Journal:  J Chem Phys       Date:  2015-01-28       Impact factor: 3.488

3.  Multiscale simulation of ideal mixtures using smoothed dissipative particle dynamics.

Authors:  Nikolai D Petsev; L Gary Leal; M Scott Shell
Journal:  J Chem Phys       Date:  2016-02-28       Impact factor: 3.488

4.  Dissipative Particle Dynamics Simulation of Ultrasound Propagation through Liquid Water.

Authors:  Petra Papež; Matej Praprotnik
Journal:  J Chem Theory Comput       Date:  2022-01-10       Impact factor: 6.006

5.  Towards the Irving-Kirkwood limit of the mechanical stress tensor.

Authors:  E R Smith; D M Heyes; D Dini
Journal:  J Chem Phys       Date:  2017-06-14       Impact factor: 3.488

Review 6.  From adaptive resolution to molecular dynamics of open systems.

Authors:  Robinson Cortes-Huerto; Matej Praprotnik; Kurt Kremer; Luigi Delle Site
Journal:  Eur Phys J B       Date:  2021-09-23       Impact factor: 1.500

  6 in total

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