Literature DB >> 17930314

Entropy of complex relevant components of Boolean networks.

Peter Krawitz1, Ilya Shmulevich.   

Abstract

Boolean network models of strongly connected modules are capable of capturing the high regulatory complexity of many biological gene regulatory circuits. We study numerically the previously introduced basin entropy, a parameter for the dynamical uncertainty or information storage capacity of a network as well as the average transient time in random relevant components as a function of their connectivity. We also demonstrate that basin entropy can be estimated from time-series data and is therefore also applicable to nondeterministic networks models.

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Year:  2007        PMID: 17930314     DOI: 10.1103/PhysRevE.76.036115

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  6 in total

1.  Maximal entropy inference of oncogenicity from phosphorylation signaling.

Authors:  T G Graeber; J R Heath; B J Skaggs; M E Phelps; F Remacle; R D Levine
Journal:  Proc Natl Acad Sci U S A       Date:  2010-03-11       Impact factor: 11.205

2.  Logical Reduction of Biological Networks to Their Most Determinative Components.

Authors:  Mihaela T Matache; Valentin Matache
Journal:  Bull Math Biol       Date:  2016-07-14       Impact factor: 1.758

3.  Connections between classical and parametric network entropies.

Authors:  Matthias Dehmer; Abbe Mowshowitz; Frank Emmert-Streib
Journal:  PLoS One       Date:  2011-01-05       Impact factor: 3.240

4.  On the Interplay between the Evolvability and Network Robustness in an Evolutionary Biological Network: A Systems Biology Approach.

Authors:  Bor-Sen Chen; Ying-Po Lin
Journal:  Evol Bioinform Online       Date:  2011-11-01       Impact factor: 1.625

5.  Identification of Biologically Essential Nodes via Determinative Power in Logical Models of Cellular Processes.

Authors:  Trevor Pentzien; Bhanwar L Puniya; Tomáš Helikar; Mihaela T Matache
Journal:  Front Physiol       Date:  2018-08-31       Impact factor: 4.566

6.  Form and function in gene regulatory networks: the structure of network motifs determines fundamental properties of their dynamical state space.

Authors:  S E Ahnert; T M A Fink
Journal:  J R Soc Interface       Date:  2016-07       Impact factor: 4.118

  6 in total

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