Literature DB >> 17930074

Direct measurements of the stabilization of single-stranded DNA under tension by single-stranded binding proteins.

K Hatch1, C Danilowicz, V Coljee, M Prentiss.   

Abstract

The unzipping and rezipping of a double-stranded DNA molecule is carried out in the presence of two single-stranded binding proteins T4 gp32 and E. Coli SSB protein to determine the effect of the proteins on the stability of single- and double-stranded DNA. The proteins do not have a significant effect on unzipping, indicating that the two proteins do not destabilize the double-stranded DNA; however, both proteins inhibit rezipping. At protein concentrations where the rezipping force response is saturated, E. Coli SSB protein reduces the rezipping force to 5.5+/-1.5 pN , while T4 gp32 completely blocks rezipping on the time scale of the experiment.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 17930074     DOI: 10.1103/PhysRevE.76.021916

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

Review 2.  Biophysical characterization of DNA binding from single molecule force measurements.

Authors:  Kathy R Chaurasiya; Thayaparan Paramanathan; Micah J McCauley; Mark C Williams
Journal:  Phys Life Rev       Date:  2010-06-04       Impact factor: 11.025

3.  Helicase processivity and not the unwinding velocity exhibits universal increase with force.

Authors:  David L Pincus; Shaon Chakrabarti; D Thirumalai
Journal:  Biophys J       Date:  2015-07-21       Impact factor: 4.033

4.  Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities.

Authors:  Francesca Fiorini; Debjani Bagchi; Hervé Le Hir; Vincent Croquette
Journal:  Nat Commun       Date:  2015-07-03       Impact factor: 14.919

5.  Single molecule kinetics uncover roles for E. coli RecQ DNA helicase domains and interaction with SSB.

Authors:  Debjani Bagchi; Maria Manosas; Weiting Zhang; Kelly A Manthei; Samar Hodeib; Bertrand Ducos; James L Keck; Vincent Croquette
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

6.  Measurement of the salt-dependent stabilization of partially open DNA by Escherichia coli SSB protein.

Authors:  K Hatch; C Danilowicz; V Coljee; M Prentiss
Journal:  Nucleic Acids Res       Date:  2007-11-21       Impact factor: 16.971

7.  Structural dynamics of E. coli single-stranded DNA binding protein reveal DNA wrapping and unwrapping pathways.

Authors:  Sukrit Suksombat; Rustem Khafizov; Alexander G Kozlov; Timothy M Lohman; Yann R Chemla
Journal:  Elife       Date:  2015-08-25       Impact factor: 8.140

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.