Literature DB >> 17928948

SNPs in disease gene mapping, medicinal drug development and evolution.

Barkur S Shastry1.   

Abstract

Single nucleotide polymorphism (SNP) technologies can be used to identify disease-causing genes in humans and to understand the inter-individual variation in drug response. These areas of research have major medical benefits. By establishing an association between the genetic make-up of an individual and drug response it may be possible to develop a genome-based diet and medicines that are more effective and safer for each individual. Additionally, SNPs can be used to understand the molecular mechanisms of sequence evolution. It has been found that throughout the given gene, the rate, type and site of nucleotide substitutions as well as the selection pressure on codons is not uniform. The residues that evolve under strong selective pressures are found to be significantly associated with human disease. Deleterious mutations that affect biological function of proteins are effectively being rejected by natural selection from the gene pool. If substituted nucleotides are fixed during evolution then they may have selection advantages, they may be neutral, or they may be deleterious and cause pathology. Therefore, it is possible that disease-associated SNPs (or pathology) and evolution can be related to one another.

Entities:  

Mesh:

Year:  2007        PMID: 17928948     DOI: 10.1007/s10038-007-0200-z

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  54 in total

1.  Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers.

Authors:  Nick Gilbert; Shelagh Boyle; Heike Fiegler; Kathryn Woodfine; Nigel P Carter; Wendy A Bickmore
Journal:  Cell       Date:  2004-09-03       Impact factor: 41.582

Review 2.  Nutrigenomics and nutrigenetics.

Authors:  Jose M Ordovas; Vincent Mooser
Journal:  Curr Opin Lipidol       Date:  2004-04       Impact factor: 4.776

Review 3.  Pharmacogenomics: challenges and opportunities.

Authors:  Dan M Roden; Russ B Altman; Neal L Benowitz; David A Flockhart; Kathleen M Giacomini; Julie A Johnson; Ronald M Krauss; Howard L McLeod; Mark J Ratain; Mary V Relling; Huijun Z Ring; Alan R Shuldiner; Richard M Weinshilboum; Scott T Weiss
Journal:  Ann Intern Med       Date:  2006-11-21       Impact factor: 25.391

4.  Segmental duplications and copy-number variation in the human genome.

Authors:  Andrew J Sharp; Devin P Locke; Sean D McGrath; Ze Cheng; Jeffrey A Bailey; Rhea U Vallente; Lisa M Pertz; Royden A Clark; Stuart Schwartz; Rick Segraves; Vanessa V Oseroff; Donna G Albertson; Daniel Pinkel; Evan E Eichler
Journal:  Am J Hum Genet       Date:  2005-05-25       Impact factor: 11.025

5.  A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.

Authors:  Chun Zhang; Dione K Bailey; Tarif Awad; Guoying Liu; Guoliang Xing; Manqiu Cao; Venu Valmeekam; Jacques Retief; Hajime Matsuzaki; Margaret Taub; Mark Seielstad; Giulia C Kennedy
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

6.  Polyunsaturated fatty acids modulate the effects of the APOA1 G-A polymorphism on HDL-cholesterol concentrations in a sex-specific manner: the Framingham Study.

Authors:  Jose M Ordovas; Dolores Corella; L Adrienne Cupples; Serkalem Demissie; Alison Kelleher; Oscar Coltell; Peter W F Wilson; Ernst J Schaefer; Katherine Tucker
Journal:  Am J Clin Nutr       Date:  2002-01       Impact factor: 7.045

Review 7.  Nutrigenetics and nutraceuticals: the next wave riding on personalized medicine.

Authors:  M T Ravi Subbiah
Journal:  Transl Res       Date:  2007-02       Impact factor: 7.012

8.  Convergent adaptation of human lactase persistence in Africa and Europe.

Authors:  Sarah A Tishkoff; Floyd A Reed; Alessia Ranciaro; Benjamin F Voight; Courtney C Babbitt; Jesse S Silverman; Kweli Powell; Holly M Mortensen; Jibril B Hirbo; Maha Osman; Muntaser Ibrahim; Sabah A Omar; Godfrey Lema; Thomas B Nyambo; Jilur Ghori; Suzannah Bumpstead; Jonathan K Pritchard; Gregory A Wray; Panos Deloukas
Journal:  Nat Genet       Date:  2006-12-10       Impact factor: 38.330

9.  Evolutionary anatomies of positions and types of disease-associated and neutral amino acid mutations in the human genome.

Authors:  Sankar Subramanian; Sudhir Kumar
Journal:  BMC Genomics       Date:  2006-12-05       Impact factor: 3.969

10.  Polymorphism analysis of six selenoprotein genes: support for a selective sweep at the glutathione peroxidase 1 locus (3p21) in Asian populations.

Authors:  Charles B Foster; Kshama Aswath; Stephen J Chanock; Heather F McKay; Ulrike Peters
Journal:  BMC Genet       Date:  2006-12-11       Impact factor: 2.797

View more
  44 in total

1.  Problems and solutions for estimating indel rates and length distributions.

Authors:  Reed A Cartwright
Journal:  Mol Biol Evol       Date:  2008-11-28       Impact factor: 16.240

Review 2.  Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses.

Authors:  Melissa J Fullwood; Chia-Lin Wei; Edison T Liu; Yijun Ruan
Journal:  Genome Res       Date:  2009-04       Impact factor: 9.043

3.  Development of T m -shift genotyping method for detection of cat-derived Giardia lamblia.

Authors:  Weida Pan; Yeqi Fu; Auwalu Yusuf Abdullahi; Mingwei Wang; Xianli Shi; Fang Yang; Xingang Yu; Xinxin Yan; Pan Zhang; Jianxiong Hang; Guoqing Li
Journal:  Parasitol Res       Date:  2017-02-15       Impact factor: 2.289

Review 4.  Metabolic syndrome components in murine models.

Authors:  Heather A Lawson; James M Cheverud
Journal:  Endocr Metab Immune Disord Drug Targets       Date:  2010-03       Impact factor: 2.895

5.  Positional conservation and amino acids shape the correct diagnosis and population frequencies of benign and damaging personal amino acid mutations.

Authors:  Sudhir Kumar; Michael P Suleski; Glenn J Markov; Simon Lawrence; Antonio Marco; Alan J Filipski
Journal:  Genome Res       Date:  2009-06-22       Impact factor: 9.043

Review 6.  Genetic diversity and medicinal drug response in eye care.

Authors:  Barkur S Shastry
Journal:  Graefes Arch Clin Exp Ophthalmol       Date:  2010-03-05       Impact factor: 3.117

7.  ComB: SNP calling and mapping analysis for color and nucleotide space platforms.

Authors:  Tade Souaiaia; Zach Frazier; Ting Chen
Journal:  J Comput Biol       Date:  2011-05-12       Impact factor: 1.479

8.  A time for atlases and atlases for time.

Authors:  Yoav Livneh; Adi Mizrahi
Journal:  Front Syst Neurosci       Date:  2010-02-22

9.  5'-UTR G-quadruplex structures acting as translational repressors.

Authors:  Jean-Denis Beaudoin; Jean-Pierre Perreault
Journal:  Nucleic Acids Res       Date:  2010-06-22       Impact factor: 16.971

10.  LD2SNPing: linkage disequilibrium plotter and RFLP enzyme mining for tag SNPs.

Authors:  Hsueh-Wei Chang; Li-Yeh Chuang; Yan-Jhu Chang; Yu-Huei Cheng; Yu-Chen Hung; Hsiang-Chi Chen; Cheng-Hong Yang
Journal:  BMC Genet       Date:  2009-06-06       Impact factor: 2.797

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.