Literature DB >> 17922113

Metabolic profiling using Fourier-transform ion-cyclotron-resonance mass spectrometry.

Daisaku Ohta1, Daisuke Shibata, Shigehiko Kanaya.   

Abstract

With the aid of the extreme resolving power of Fourier-transform ion-cyclotron-resonance mass spectrometry (FT-ICR/MS), we have developed a metabolomics platform for high-throughput metabolic profiling and metabolite candidate identification integrating a data-processing system, the Dr.DMASS program ( http://kanaya.naist.jp/DrDMASS/ ), and a metabolite-species database, KNApSAcK ( http://kanaya.aist-nara.ac.jp/KNApSAcK/ ). We discuss the potential of this FT-ICR/MS-based metabolic profiling scheme as a general metabolomics tool by clarification of plant metabolic disorders and specific metabolite accumulation patterns caused by herbicidal enzyme inhibitors.

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Year:  2007        PMID： 17922113     DOI： 10.1007/s00216-007-1650-z

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN： 1618-2642            Impact factor:   4.142


  5 in total

1.  Global metabolic profiling procedures for urine using UPLC-MS.

Authors:  Elizabeth J Want; Ian D Wilson; Helen Gika; Georgios Theodoridis; Robert S Plumb; John Shockcor; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2010-06       Impact factor: 13.491

2.  Global metabolic profiling of animal and human tissues via UPLC-MS.

Authors:  Elizabeth J Want; Perrine Masson; Filippos Michopoulos; Ian D Wilson; Georgios Theodoridis; Robert S Plumb; John Shockcor; Neil Loftus; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2012-12-06       Impact factor: 13.491

Review 3.  Data Mining Methods for Omics and Knowledge of Crude Medicinal Plants toward Big Data Biology.

Authors:  Farit M Afendi; Naoaki Ono; Yukiko Nakamura; Kensuke Nakamura; Latifah K Darusman; Nelson Kibinge; Aki Hirai Morita; Ken Tanaka; Hisayuki Horai; Md Altaf-Ul-Amin; Shigehiko Kanaya
Journal:  Comput Struct Biotechnol J       Date:  2013-03-23       Impact factor: 7.271

4.  Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Jun Han; Ryan M Danell; Jayanti R Patel; Dmitry R Gumerov; Cameron O Scarlett; J Paul Speir; Carol E Parker; Ivan Rusyn; Steven Zeisel; Christoph H Borchers
Journal:  Metabolomics       Date:  2008-06       Impact factor: 4.290

5.  MassTRIX: mass translator into pathways.

Authors:  Karsten Suhre; Philippe Schmitt-Kopplin
Journal:  Nucleic Acids Res       Date:  2008-04-28       Impact factor: 16.971
  5 in total

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