Literature DB >> 17920554

A spectrophotometric assay for histone deacetylase 8.

David G Fatkins1, Weiping Zheng.   

Abstract

Inhibitors for the classical protein deacetylase enzymes have been actively pursued to develop the next generation of cancer therapy. Developing a novel convenient assay platform for the classical enzyme-catalyzed reactions could thus facilitate the drug discovery process. Based on our previous studies demonstrating the functional mimicry of N(epsilon)-thioacetyl-lysine for N(epsilon)-acetyl-lysine in the reaction catalyzed by the classical enzyme histone deacetylase 8 (HDAC8) on a peptide template derived from the C terminus of the human p53 tumor suppressor protein, we have developed a spectrophotometric HDAC8 assay via quantifying thioacetate produced from the enzymatic dethioacetylation with Ellman's reagent 5,5'-dithiobis(2-nitrobenzoate). We further demonstrated that this novel assay was selective for HDAC8 versus HDAC1 and 2 and for other classical protein deacetylase enzymes present in the HeLa nuclear extracts, thus making it potentially suitable not only for screening HDAC8-selective inhibitors but also for selectively assessing HDAC8 activity under (patho)physiological conditions.

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Year:  2007        PMID: 17920554     DOI: 10.1016/j.ab.2007.08.031

Source DB:  PubMed          Journal:  Anal Biochem        ISSN: 0003-2697            Impact factor:   3.365


  6 in total

1.  Coumarin-suberoylanilide hydroxamic acid as a fluorescent probe for determining binding affinities and off-rates of histone deacetylase inhibitors.

Authors:  Raushan K Singh; Tanmay Mandal; Narayanaganesh Balasubramanian; Gregory Cook; D K Srivastava
Journal:  Anal Biochem       Date:  2010-09-22       Impact factor: 3.365

2.  Continuous Histone Deacylase Activity Assays.

Authors:  Matthes Zessin; Marat Meleshin; Wolfgang Sippl; Mike Schutkowski
Journal:  Methods Mol Biol       Date:  2023

3.  Peptide arrays identify isoform-selective substrates for profiling endogenous lysine deacetylase activity.

Authors:  Zachary A Gurard-Levin; Kristopher A Kilian; Joohoon Kim; Katinka Bähr; Milan Mrksich
Journal:  ACS Chem Biol       Date:  2010-09-17       Impact factor: 5.100

Review 4.  Mechanisms and molecular probes of sirtuins.

Authors:  Brian C Smith; William C Hallows; John M Denu
Journal:  Chem Biol       Date:  2008-10-20

5.  Hydroxamic acid-modified peptide microarrays for profiling isozyme-selective interactions and inhibition of histone deacetylases.

Authors:  Carlos Moreno-Yruela; Michael Bæk; Adela-Eugenie Vrsanova; Clemens Schulte; Hans M Maric; Christian A Olsen
Journal:  Nat Commun       Date:  2021-01-04       Impact factor: 14.919

6.  Substituting N(epsilon)-thioacetyl-lysine for N(epsilon)-acetyl-lysine in peptide substrates as a general approach to inhibiting human NAD(+)-dependent protein deacetylases.

Authors:  David G Fatkins; Weiping Zheng
Journal:  Int J Mol Sci       Date:  2008-01-07       Impact factor: 6.208

  6 in total

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