Literature DB >> 17914477

Time-resolved methods in biophysics. 6. Time-resolved Laue crystallography as a tool to investigate photo-activated protein dynamics.

Dominique Bourgeois1, Friedrich Schotte, Maurizio Brunori, Beatrice Vallone.   

Abstract

When polychromatic X-rays are shined onto crystalline material, they generate a Laue diffraction pattern. At third generation synchrotron radiation sources, a single X-ray pulse of approximately 100 ps duration is enough to produce interpretable Laue data from biomolecular crystals. Thus, by initiating biological turnover in a crystalline protein, structural changes along the reaction pathway may be filmed by ultra-fast Laue diffraction. Using laser-light as a trigger, transient species in photosensitive macromolecules can be captured at near atomic resolution with sub-nanosecond time-resolution. Such pump-probe Laue experiments have now reached an outstanding level of sophistication and have found a domain of excellence in the investigation of light-sensitive proteins undergoing cyclic photo-reactions and producing stiff crystals. The main theoretical concepts of Laue diffraction and the challenges associated with time-resolved experiments on biological crystals are recalled. The recent advances in the design of experiments are presented in terms of instrumental choices, data collection strategy and data processing, and some of the inherent difficulties of the method are highlighted. The discussion is based on the example of myoglobin, a protein that has traversed the whole history of pump-probe Laue diffraction, and for which a massive amount of data have provided considerable insight into the understanding of protein dynamics.

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Year:  2007        PMID: 17914477     DOI: 10.1039/b704249c

Source DB:  PubMed          Journal:  Photochem Photobiol Sci        ISSN: 1474-905X            Impact factor:   3.982


  11 in total

1.  Optimizing the accuracy and precision of the single-pulse Laue technique for synchrotron photo-crystallography.

Authors:  Radosław Kamiński; Timothy Graber; Jason B Benedict; Robert Henning; Yu Sheng Chen; Stephan Scheins; Marc Messerschmidt; Philip Coppens
Journal:  J Synchrotron Radiat       Date:  2010-05-29       Impact factor: 2.616

2.  Alkyl isocyanides serve as transition state analogues for ligand entry and exit in myoglobin.

Authors:  George C Blouin; Rachel L Schweers; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

3.  Feasibility of one-shot-per-crystal structure determination using Laue diffraction.

Authors:  Sterling Cornaby; Doletha M E Szebenyi; Detlef-M Smilgies; David J Schuller; Richard Gillilan; Quan Hao; Donald H Bilderback
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-12-21

4.  The associative nature of adenylyl transfer catalyzed by T4 DNA ligase.

Authors:  Alexey V Cherepanov; Elena V Doroshenko; Jörg Matysik; Simon de Vries; Huub J M de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2008-06-18       Impact factor: 11.205

5.  Straight-chain alkyl isocyanides open the distal histidine gate in crystal structures of myoglobin .

Authors:  Robert D Smith; George C Blouin; Kenneth A Johnson; George N Phillips; John S Olson
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

6.  Ultrafast Structural Changes Decomposed from Serial Crystallographic Data.

Authors:  Zhong Ren
Journal:  J Phys Chem Lett       Date:  2019-11-07       Impact factor: 6.475

7.  Molecular Dynamics Simulations of Macromolecular Crystals.

Authors:  David S Cerutti; David A Case
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2018-11-16

8.  Time-resolved protein nanocrystallography using an X-ray free-electron laser.

Authors:  Andrew Aquila; Mark S Hunter; R Bruce Doak; Richard A Kirian; Petra Fromme; Thomas A White; Jakob Andreasson; David Arnlund; Saša Bajt; Thomas R M Barends; Miriam Barthelmess; Michael J Bogan; Christoph Bostedt; Hervé Bottin; John D Bozek; Carl Caleman; Nicola Coppola; Jan Davidsson; Daniel P DePonte; Veit Elser; Sascha W Epp; Benjamin Erk; Holger Fleckenstein; Lutz Foucar; Matthias Frank; Raimund Fromme; Heinz Graafsma; Ingo Grotjohann; Lars Gumprecht; Janos Hajdu; Christina Y Hampton; Andreas Hartmann; Robert Hartmann; Stefan Hau-Riege; Günter Hauser; Helmut Hirsemann; Peter Holl; James M Holton; André Hömke; Linda Johansson; Nils Kimmel; Stephan Kassemeyer; Faton Krasniqi; Kai-Uwe Kühnel; Mengning Liang; Lukas Lomb; Erik Malmerberg; Stefano Marchesini; Andrew V Martin; Filipe R N C Maia; Marc Messerschmidt; Karol Nass; Christian Reich; Richard Neutze; Daniel Rolles; Benedikt Rudek; Artem Rudenko; Ilme Schlichting; Carlo Schmidt; Kevin E Schmidt; Joachim Schulz; M Marvin Seibert; Robert L Shoeman; Raymond Sierra; Heike Soltau; Dmitri Starodub; Francesco Stellato; Stephan Stern; Lothar Strüder; Nicusor Timneanu; Joachim Ullrich; Xiaoyu Wang; Garth J Williams; Georg Weidenspointner; Uwe Weierstall; Cornelia Wunderer; Anton Barty; John C H Spence; Henry N Chapman
Journal:  Opt Express       Date:  2012-01-30       Impact factor: 3.894

9.  New methods in time-resolved Laue pump-probe crystallography at synchrotron sources.

Authors:  Philip Coppens; Bertrand Fournier
Journal:  J Synchrotron Radiat       Date:  2015-01-28       Impact factor: 2.616

10.  The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications.

Authors:  Inbal Halperin; Dariya S Glazer; Shirley Wu; Russ B Altman
Journal:  BMC Genomics       Date:  2008-09-16       Impact factor: 3.969

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