Literature DB >> 17914241

Type 2 diabetes mellitus: phylogenetic motifs for predicting protein functional sites.

Ashok Sharma1, Tanuja Rastogi, Meenakshi Bhartiya, A K Shasany, S P S Khanuja.   

Abstract

Diabetes mellitus, commonly referred to as diabetes, is a medical condition associated with abnormally high levels of glucose (or sugar) in the blood. Keeping this view, we demonstrate the phylogenetic motifs (PMs) identification in type 2 diabetes mellitus very likely corresponding to protein functional sites. In this article, we have identified PMs for all the candidate genes for type 2 diabetes mellitus. Glycine 310 remains conserved for glucokinase and potassium channel KCNJ11. Isoleucine 137 was conserved for insulin receptor and regulatory subunit of a phosphorylating enzyme. Whereas residues valine, leucine, methionine were highly conserved for insulin receptor. Occurrence of proline was very high for calpain 10 gene and glucose transporter.

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Year:  2007        PMID: 17914241     DOI: 10.1007/s12038-007-0098-9

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  7 in total

1.  Automatic methods for predicting functionally important residues.

Authors:  Antonio del Sol; Antonio del Sol Mesa; Florencio Pazos; Alfonso Valencia
Journal:  J Mol Biol       Date:  2003-02-28       Impact factor: 5.469

2.  A family of evolution-entropy hybrid methods for ranking protein residues by importance.

Authors:  I Mihalek; I Res; O Lichtarge
Journal:  J Mol Biol       Date:  2004-03-05       Impact factor: 5.469

3.  Predicting protein functional sites with phylogenetic motifs.

Authors:  David La; Brian Sutch; Dennis R Livesay
Journal:  Proteins       Date:  2005-02-01

4.  Methods and statistics for combining motif match scores.

Authors:  T L Bailey; M Gribskov
Journal:  J Comput Biol       Date:  1998       Impact factor: 1.479

5.  An evolutionary trace method defines binding surfaces common to protein families.

Authors:  O Lichtarge; H R Bourne; F E Cohen
Journal:  J Mol Biol       Date:  1996-03-29       Impact factor: 5.469

6.  The enolase superfamily: a general strategy for enzyme-catalyzed abstraction of the alpha-protons of carboxylic acids.

Authors:  P C Babbitt; M S Hasson; J E Wedekind; D R Palmer; W C Barrett; G H Reed; I Rayment; D Ringe; G L Kenyon; J A Gerlt
Journal:  Biochemistry       Date:  1996-12-24       Impact factor: 3.162

7.  MINER: software for phylogenetic motif identification.

Authors:  David La; Dennis R Livesay
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

  7 in total

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