Literature DB >> 17905996

Identification of promoters recognized by RNA polymerase-sigmaE holoenzyme from Thermus thermophilus HB8.

Akeo Shinkai1, Naomi Ohbayashi, Takaho Terada, Mikako Shirouzu, Seiki Kuramitsu, Shigeyuki Yokoyama.   

Abstract

Thermus thermophilus sigma(E), an extracytoplasmic function sigma factor from the extremely thermophilic bacterium Thermus thermophilus HB8, bound to the RNA polymerase core enzyme and showed transcriptional activity. With the combination of in vitro transcription assay and GeneChip technology, we identified three promoters recognized by sigma(E). The predicted consensus promoter sequence for sigma(E) is 5'-CA(A/T)(A/C)C(A/C)-N(15)-CCGTA-3'.

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Year:  2007        PMID： 17905996      PMCID： PMC2168962          DOI： 10.1128/JB.01076-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  30 in total

Review 1.  The functional and regulatory roles of sigma factors in transcription.

Authors:  C A Gross; C Chan; A Dombroski; T Gruber; M Sharp; J Tupy; B Young
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1998

Review 2.  Anti-sigma factors.

Authors:  J D Helmann
Journal:  Curr Opin Microbiol       Date:  1999-04       Impact factor: 7.934

3.  Isolation and physical properties of the DNA-directed RNA polymerase from Thermus thermophilus HB8.

Authors:  S Wnendt; R K Hartmann; N Ulbrich; V A Erdmann
Journal:  Eur J Biochem       Date:  1990-07-31

Review 4.  The anti-sigma factors.

Authors:  K T Hughes; K Mathee
Journal:  Annu Rev Microbiol       Date:  1998       Impact factor: 15.500

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

Review 6.  Transmembrane transcriptional control (surface signalling) of the Escherichia coli Fec type.

Authors:  Volkmar Braun; Susanne Mahren
Journal:  FEMS Microbiol Rev       Date:  2004-10-29       Impact factor: 16.408

Review 7.  The extracytoplasmic function sigma factors: role and regulation.

Authors:  D Missiakas; S Raina
Journal:  Mol Microbiol       Date:  1998-06       Impact factor: 3.501

8.  Prokaryotic and eukaryotic RNA polymerases have homologous core subunits.

Authors:  D Sweetser; M Nonet; R A Young
Journal:  Proc Natl Acad Sci U S A       Date:  1987-03       Impact factor: 11.205

9.  Analysis of the Streptomyces coelicolor sigE gene reveals the existence of a subfamily of eubacterial RNA polymerase sigma factors involved in the regulation of extracytoplasmic functions.

Authors:  M A Lonetto; K L Brown; K E Rudd; M J Buttner
Journal:  Proc Natl Acad Sci U S A       Date:  1994-08-02       Impact factor: 11.205

10.  Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance.

Authors:  Marina V Omelchenko; Yuri I Wolf; Elena K Gaidamakova; Vera Y Matrosova; Alexander Vasilenko; Min Zhai; Michael J Daly; Eugene V Koonin; Kira S Makarova
Journal:  BMC Evol Biol       Date:  2005-10-20       Impact factor: 3.260
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  1 in total

1.  Silica-Induced Protein (Sip) in Thermophilic Bacterium Thermus thermophilus Responds to Low Iron Availability.

Authors:  Yasuhiro Fujino; Yuko Nagayoshi; Makoto Iwase; Takushi Yokoyama; Toshihisa Ohshima; Katsumi Doi
Journal:  Appl Environ Microbiol       Date:  2016-05-16       Impact factor: 4.792
  1 in total

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