Literature DB >> 17905886

Design and performance of a 16S rRNA-targeted oligonucleotide probe for detection of members of the genus Bdellovibrio by fluorescence in situ hybridization.

Khaled K Mahmoud1, Damian McNeely, Chelsea Elwood, Susan F Koval.   

Abstract

A 16S rRNA-targeted, Cy3-labeled oligonucleotide probe was designed to detect members of the genus Bdellovibrio by fluorescence in situ hybridization. Specific hybridization conditions were established; however, the detection of bdellovibrios in environmental samples required enrichment, confirming that Bdellovibrio spp. are not present in large numbers in the environment.

Entities:  

Mesh：

Substances：

Year:  2007        PMID： 17905886      PMCID： PMC2168191          DOI： 10.1128/AEM.01112-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  20 in total

1.  Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.

Authors:  R I Amann; B J Binder; R J Olson; S W Chisholm; R Devereux; D A Stahl
Journal:  Appl Environ Microbiol       Date:  1990-06       Impact factor: 4.792

2.  Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like organisms.

Authors:  Yaacov Davidov; Avital Friedjung; Edouard Jurkevitch
Journal:  Environ Microbiol       Date:  2006-09       Impact factor: 5.491

3.  Improved fluorescent in situ hybridization method for detection of bacteria from activated sludge and river water by using DNA molecular beacons and flow cytometry.

Authors:  Jeremy Lenaerts; Hilary M Lappin-Scott; Jonathan Porter
Journal:  Appl Environ Microbiol       Date:  2007-02-02       Impact factor: 4.792

Review 4.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation.

Authors:  R I Amann; W Ludwig; K H Schleifer
Journal:  Microbiol Rev       Date:  1995-03

5.  The oligonucleotide probe database.

Authors:  E W Alm; D B Oerther; N Larsen; D A Stahl; L Raskin
Journal:  Appl Environ Microbiol       Date:  1996-10       Impact factor: 4.792

6.  Effect of paracrystalline protein surface layers on predation by Bdellovibrio bacteriovorus.

Authors:  S F Koval; S H Hynes
Journal:  J Bacteriol       Date:  1991-04       Impact factor: 3.490

7.  Flow cytometric analysis of activated sludge with rRNA-targeted probes.

Authors:  G Wallner; R Erhart; R Amann
Journal:  Appl Environ Microbiol       Date:  1995-05       Impact factor: 4.792

8.  Characterisation of microbial community composition of a Siberian tundra soil by fluorescence in situ hybridisation.

Authors:  Svenja Kobabe; Dirk Wagner; Eva-Maria Pfeiffer
Journal:  FEMS Microbiol Ecol       Date:  2004-10-01       Impact factor: 4.194

9.  A conjugation procedure for Bdellovibrio bacteriovorus and its use to identify DNA sequences that enhance the plaque-forming ability of a spontaneous host-independent mutant.

Authors:  T W Cotter; M F Thomashow
Journal:  J Bacteriol       Date:  1992-10       Impact factor: 3.490

10.  Detection of micro-organisms in soil after in situ hybridization with rRNA-targeted, fluorescently labelled oligonucleotides.

Authors:  D Hahn; R I Amann; W Ludwig; A D Akkermans; K H Schleifer
Journal:  J Gen Microbiol       Date:  1992-05
View more
  9 in total

1.  Cell-cycle progress in obligate predatory bacteria is dependent upon sequential sensing of prey recognition and prey quality cues.

Authors:  Or Rotem; Zohar Pasternak; Eyal Shimoni; Eduard Belausov; Ziv Porat; Shmuel Pietrokovski; Edouard Jurkevitch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-20       Impact factor: 11.205

2.  Visualizing Bdellovibrio bacteriovorus by Using the tdTomato Fluorescent Protein.

Authors:  Somdatta Mukherjee; Kimberly M Brothers; Robert M Q Shanks; Daniel E Kadouri
Journal:  Appl Environ Microbiol       Date:  2015-12-28       Impact factor: 4.792

3.  Spatially Organized Films from Bdellovibrio bacteriovorus Prey Lysates.

Authors:  Megan A Ferguson; Megan E Núñez; Hyeong-Jin Kim; Shana Goffredi; Elya Shamskhou; Leanna Faudree; Evan Chang; Rebecca M Landry; Andrew Ma; Da-Eun Choi; Nicholas Thomas; Jaclyn Schmitt; Eileen M Spain
Journal:  Appl Environ Microbiol       Date:  2014-09-19       Impact factor: 4.792

4.  Validating Flow Cytometry as a Method for Quantifying Bdellovibrio Predatory Bacteria and Its Prey for Microbial Ecology.

Authors:  Ayo Ogundero; Marta Vignola; Stephanie Connelly; William T Sloan
Journal:  Microbiol Spectr       Date:  2022-02-23

5.  Determination of the Predatory Capability of Bdellovibrio bacteriovorus HD100.

Authors:  Cristina Herencias; Auxiliadora M Prieto; Virginia Martínez
Journal:  Bio Protoc       Date:  2017-03-20

6.  Insights into the microbiome assembly during different growth stages and storage of strawberry plants.

Authors:  Expedito Olimi; Peter Kusstatscher; Wisnu Adi Wicaksono; Ahmed Abdelfattah; Tomislav Cernava; Gabriele Berg
Journal:  Environ Microbiome       Date:  2022-04-28

7.  From the Inside Out: an Epibiotic Bdellovibrio Predator with an Expanded Genomic Complement.

Authors:  Christoph M Deeg; Tan T Le; Matthias M Zimmer; Curtis A Suttle
Journal:  J Bacteriol       Date:  2020-03-26       Impact factor: 3.490

8.  Benchmarking taxonomic assignments based on 16S rRNA gene profiling of the microbiota from commonly sampled environments.

Authors:  Alexandre Almeida; Alex L Mitchell; Aleksandra Tarkowska; Robert D Finn
Journal:  Gigascience       Date:  2018-05-01       Impact factor: 6.524

9.  Comparison of the bacterial community composition in the granular and the suspended phase of sequencing batch reactors.

Authors:  Enikö Szabó; Raquel Liébana; Malte Hermansson; Oskar Modin; Frank Persson; Britt-Marie Wilén
Journal:  AMB Express       Date:  2017-09-05       Impact factor: 3.298
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.