Literature DB >> 17902917

Frequency-frequency correlation functions and apodization in two-dimensional infrared vibrational echo spectroscopy: a new approach.

Kyungwon Kwak1, Sungnam Park, Ilya J Finkelstein, M D Fayer.   

Abstract

Ultrafast two-dimensional infrared (2D-IR) vibrational echo spectroscopy can probe structural dynamics under thermal equilibrium conditions on time scales ranging from femtoseconds to approximately 100 ps and longer. One of the important uses of 2D-IR spectroscopy is to monitor the dynamical evolution of a molecular system by reporting the time dependent frequency fluctuations of an ensemble of vibrational probes. The vibrational frequency-frequency correlation function (FFCF) is the connection between the experimental observables and the microscopic molecular dynamics and is thus the central object of interest in studying dynamics with 2D-IR vibrational echo spectroscopy. A new observable is presented that greatly simplifies the extraction of the FFCF from experimental data. The observable is the inverse of the center line slope (CLS) of the 2D spectrum. The CLS is the inverse of the slope of the line that connects the maxima of the peaks of a series of cuts through the 2D spectrum that are parallel to the frequency axis associated with the first electric field-matter interaction. The CLS varies from a maximum of 1 to 0 as spectral diffusion proceeds. It is shown analytically to second order in time that the CLS is the T(w) (time between pulses 2 and 3) dependent part of the FFCF. The procedure to extract the FFCF from the CLS is described, and it is shown that the T(w) independent homogeneous contribution to the FFCF can also be recovered to yield the full FFCF. The method is demonstrated by extracting FFCFs from families of calculated 2D-IR spectra and the linear absorption spectra produced from known FFCFs. Sources and magnitudes of errors in the procedure are quantified, and it is shown that in most circumstances, they are negligible. It is also demonstrated that the CLS is essentially unaffected by Fourier filtering methods (apodization), which can significantly increase the efficiency of data acquisition and spectral resolution, when the apodization is applied along the axis used for obtaining the CLS and is symmetrical about tau=0. The CLS is also unchanged by finite pulse durations that broaden 2D spectra.

Entities:  

Year:  2007        PMID: 17902917     DOI: 10.1063/1.2772269

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  69 in total

1.  Adding a dimension to the infrared spectra of interfaces using heterodyne detected 2D sum-frequency generation (HD 2D SFG) spectroscopy.

Authors:  Wei Xiong; Jennifer E Laaser; Randy D Mehlenbacher; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

2.  Characterizing the dynamics of functionally relevant complexes of formate dehydrogenase.

Authors:  Jigar N Bandaria; Samrat Dutta; Michael W Nydegger; William Rock; Amnon Kohen; Christopher M Cheatum
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

3.  Intrinsic structural heterogeneity and long-term maturation of amyloid β peptide fibrils.

Authors:  Jianqiang Ma; Hiroaki Komatsu; Yung Sam Kim; Liu Liu; Robin M Hochstrasser; Paul H Axelsen
Journal:  ACS Chem Neurosci       Date:  2013-06-12       Impact factor: 4.418

4.  Ultrafast Hydrogen-Bonding Dynamics in Amyloid Fibrils.

Authors:  Ileana M Pazos; Jianqiang Ma; Debopreeti Mukherjee; Feng Gai
Journal:  J Phys Chem B       Date:  2018-06-21       Impact factor: 2.991

5.  Tautomeric Effect of Histidine on β-Sheet Formation of Amyloid Beta 1-40: 2D-IR Simulations.

Authors:  Yeonsig Nam; Mahroof Kalathingal; Shinji Saito; Jin Yong Lee
Journal:  Biophys J       Date:  2020-07-18       Impact factor: 4.033

6.  The dynamics of peptide-water interactions in dialanine: An ultrafast amide I 2D IR and computational spectroscopy study.

Authors:  Chi-Jui Feng; Andrei Tokmakoff
Journal:  J Chem Phys       Date:  2017-08-28       Impact factor: 3.488

7.  Dynamics of Functionalized Surface Molecular Monolayers Studied with Ultrafast Infrared Vibrational Spectroscopy.

Authors:  Daniel E Rosenfeld; Jun Nishida; Chang Yan; Zsolt Gengeliczki; Brian J Smith; Michael D Fayer
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2012-11-08       Impact factor: 4.126

8.  A peptide's perspective of water dynamics.

Authors:  Ayanjeet Ghosh; Robin M Hochstrasser
Journal:  Chem Phys       Date:  2011-08-11       Impact factor: 2.348

Review 9.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013

10.  Fast dynamics of HP35 for folded and urea-unfolded conditions.

Authors:  Jean K Chung; Megan C Thielges; Stephen R Lynch; Michael D Fayer
Journal:  J Phys Chem B       Date:  2012-08-29       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.