Literature DB >> 17901335

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts.

M Thomas P Gilbert1, Lynn P Tomsho, Snjezana Rendulic, Michael Packard, Daniela I Drautz, Andrei Sher, Alexei Tikhonov, Love Dalén, Tatyana Kuznetsova, Pavel Kosintsev, Paula F Campos, Thomas Higham, Matthew J Collins, Andrew S Wilson, Fyodor Shidlovskiy, Bernard Buigues, Per G P Ericson, Mietje Germonpré, Anders Götherström, Paola Iacumin, Vladimir Nikolaev, Malgosia Nowak-Kemp, Eske Willerslev, James R Knight, Gerard P Irzyk, Clotilde S Perbost, Karin M Fredrikson, Timothy T Harkins, Sharon Sheridan, Webb Miller, Stephan C Schuster.   

Abstract

Although the application of sequencing-by-synthesis techniques to DNA extracted from bones has revolutionized the study of ancient DNA, it has been plagued by large fractions of contaminating environmental DNA. The genetic analyses of hair shafts could be a solution: We present 10 previously unexamined Siberian mammoth (Mammuthus primigenius) mitochondrial genomes, sequenced with up to 48-fold coverage. The observed levels of damage-derived sequencing errors were lower than those observed in previously published frozen bone samples, even though one of the specimens was >50,000 14C years old and another had been stored for 200 years at room temperature. The method therefore sets the stage for molecular-genetic analysis of museum collections.

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Year:  2007        PMID: 17901335     DOI: 10.1126/science.1146971

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  65 in total

1.  History in a single hair.

Authors:  Howard Wolinsky
Journal:  EMBO Rep       Date:  2010-06       Impact factor: 8.807

2.  Postmortem miscoding lesions in sequence analysis of human ancient mitochondrial DNA.

Authors:  Ryan Lamers; Shana Hayter; Carney D Matheson
Journal:  J Mol Evol       Date:  2008-12-06       Impact factor: 2.395

3.  DNA content and distribution in ancient feathers and potential to reconstruct the plumage of extinct avian taxa.

Authors:  Nicolas J Rawlence; Jamie R Wood; Kyle N Armstrong; Alan Cooper
Journal:  Proc Biol Sci       Date:  2009-07-01       Impact factor: 5.349

4.  Fossil avian eggshell preserves ancient DNA.

Authors:  Charlotte L Oskam; James Haile; Emma McLay; Paul Rigby; Morten E Allentoft; Maia E Olsen; Camilla Bengtsson; Gifford H Miller; Jean-Luc Schwenninger; Chris Jacomb; Richard Walter; Alexander Baynes; Joe Dortch; Michael Parker-Pearson; M Thomas P Gilbert; Richard N Holdaway; Eske Willerslev; Michael Bunce
Journal:  Proc Biol Sci       Date:  2010-03-10       Impact factor: 5.349

5.  True single-molecule DNA sequencing of a pleistocene horse bone.

Authors:  Ludovic Orlando; Aurelien Ginolhac; Maanasa Raghavan; Julia Vilstrup; Morten Rasmussen; Kim Magnussen; Kathleen E Steinmann; Philipp Kapranov; John F Thompson; Grant Zazula; Duane Froese; Ida Moltke; Beth Shapiro; Michael Hofreiter; Khaled A S Al-Rasheid; M Thomas P Gilbert; Eske Willerslev
Journal:  Genome Res       Date:  2011-07-29       Impact factor: 9.043

6.  Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens.

Authors:  Victor C Mason; Gang Li; Kristofer M Helgen; William J Murphy
Journal:  Genome Res       Date:  2011-08-31       Impact factor: 9.043

7.  Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet.

Authors:  Céline Bon; Nicolas Caudy; Maud de Dieuleveult; Philippe Fosse; Michel Philippe; Frédéric Maksud; Eliane Beraud-Colomb; Eric Bouzaid; Rym Kefi; Christelle Laugier; Bernard Rousseau; Didier Casane; Johannes van der Plicht; Jean-Marc Elalouf
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-27       Impact factor: 11.205

8.  Ancient DNA reveals late survival of mammoth and horse in interior Alaska.

Authors:  James Haile; Duane G Froese; Ross D E Macphee; Richard G Roberts; Lee J Arnold; Alberto V Reyes; Morten Rasmussen; Rasmus Nielsen; Barry W Brook; Simon Robinson; Martina Demuro; M Thomas P Gilbert; Kasper Munch; Jeremy J Austin; Alan Cooper; Ian Barnes; Per Möller; Eske Willerslev
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-17       Impact factor: 11.205

9.  Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal.

Authors:  Pontus Skoglund; Bernd H Northoff; Michael V Shunkov; Anatoli P Derevianko; Svante Pääbo; Johannes Krause; Mattias Jakobsson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

10.  Paleogenomics in a temperate environment: shotgun sequencing from an extinct Mediterranean caprine.

Authors:  Oscar Ramírez; Elena Gigli; Pere Bover; Josep Antoni Alcover; Jaume Bertranpetit; Jose Castresana; Carles Lalueza-Fox
Journal:  PLoS One       Date:  2009-05-22       Impact factor: 3.240

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