Literature DB >> 17897092

Ramachandran plot on the web (2.0).

K Gopalakrishnan1, G Sowmiya, S S Sheik, K Sekar.   

Abstract

The Ramachandran plot displays the main chain conformation angles (Phi and Psi) of the polypeptide chain of a protein molecule. The paper reports the updated version of the Ramachandran plot web server and has several improved options for displaying the conformation angles in various regions. In addition, options are provided to display the conformation angles in various secondary structural elements and regions within the user specified Phi and Psi values in the plot. The updated version is accessible at the following URL: http://dicsoft1.physics.iisc.ernet.in/rp/.

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Year:  2007        PMID： 17897092     DOI： 10.2174/092986607781483912

Source DB:  PubMed          Journal:  Protein Pept Lett        ISSN： 0929-8665            Impact factor:   1.890


  16 in total

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Journal:  Pharmaceuticals (Basel)       Date:  2022-05-25

2.  Structure and dynamics studies of sterol 24-C-methyltransferase with mechanism based inactivators for the disruption of ergosterol biosynthesis.

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3.  DEND mutation in Kir6.2 (KCNJ11) reveals a flexible N-terminal region critical for ATP-sensing of the KATP channel.

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Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

4.  Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display.

Authors:  Takashi Nagata; Kie Shirakawa; Naohiro Kobayashi; Hirokazu Shiheido; Noriko Tabata; Yuko Sakuma-Yonemura; Kenichi Horisawa; Masato Katahira; Nobuhide Doi; Hiroshi Yanagawa
Journal:  PLoS One       Date:  2014-10-02       Impact factor: 3.240

5.  Evolutionary Analysis and Prediction of Peptide Vaccine Candidates for Foot-and-Mouth-Disease Virus Types A and O in Bangladesh.

Authors:  Samina Momtaz; Arafat Rahman; Munawar Sultana; M Anwar Hossain
Journal:  Evol Bioinform Online       Date:  2014-11-03       Impact factor: 1.625

Review 6.  Building a virtual ligand screening pipeline using free software: a survey.

Authors:  Enrico Glaab
Journal:  Brief Bioinform       Date:  2015-06-20       Impact factor: 11.622

7.  Drug Target Exploitable Structural Features of Adenylyl Cyclase Activity in Schistosoma mansoni.

Authors:  Andreas N Mbah; Henri L Kamga; Omotayo R Awofolu; Raphael D Isokpehi
Journal:  Drug Target Insights       Date:  2012-10-24

8.  Prediction of structure of human WNT-CRD (FZD) complex for computational drug repurposing.

Authors:  Qurrat U Ain; Umair Seemab; Sajid Rashid; Muhammad Sulaman Nawaz; Mohammad A Kamal
Journal:  PLoS One       Date:  2013-01-25       Impact factor: 3.240

9.  Antigenic heterogeneity of capsid protein VP1 in foot-and-mouth disease virus (FMDV) serotype Asia 1.

Authors:  S M Sabbir Alam; Ruhul Amin; Mohammed Ziaur Rahman; M Anwar Hossain; Munawar Sultana
Journal:  Adv Appl Bioinform Chem       Date:  2013-08-13

10.  A novel phospholipase A2 (D49) from the venom of the Crotalus oreganus abyssus (North American Grand canyon rattlesnake).

Authors:  W Martins; P A Baldasso; K M Honório; V G Maltarollo; R I M A Ribeiro; B M A Carvalho; A M Soares; L A Calderon; R G Stábeli; M A O Caballol; G Acosta; E Oliveira; S Marangoni; F Albericio; S L Da Silva
Journal:  Biomed Res Int       Date:  2014-02-24       Impact factor: 3.411
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