Literature DB >> 17893085

TreeSnatcher: coding trees from images.

Thomas Laubach1, Arndt von Haeseler.   

Abstract

UNLABELLED: TreeSnatcher is a GUI-driven JAVA application for the semi-automatic recognition of multifurcating phylogenetic trees in pixel images. The program accepts an image file as input and analyzes the topology and the metrics of a tree depicted. The analysis is carried out in a multiple-stage process using algorithms from image analysis. In the end, TreeSnatcher produces a Newick tree code that represents the tree structure optionally including branch lengths. TreeSnatcher can process trees with 100 leaves or more in a few seconds. AVAILABILITY: TreeSnatcher was developed in JAVA under Mac OS X and is executable on UNIX/Linux, Windows and Mac OS X systems. The application and its documentation can be freely downloaded from http://www.cibiv.at/software/treesnatcher.

Mesh：

Year:  2007        PMID： 17893085     DOI： 10.1093/bioinformatics/btm438

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  6 in total

1.  Thermal conductance and basal metabolic rate are part of a coordinated system for heat transfer regulation.

Authors:  Daniel E Naya; Lucía Spangenberg; Hugo Naya; Francisco Bozinovic
Journal:  Proc Biol Sci       Date:  2013-07-31       Impact factor: 5.349

2.  TreeSnatcher plus: capturing phylogenetic trees from images.

Authors:  Thomas Laubach; Arndt von Haeseler; Martin J Lercher
Journal:  BMC Bioinformatics       Date:  2012-05-24       Impact factor: 3.169

3.  TreeRipper web application: towards a fully automated optical tree recognition software.

Authors:  Joseph Hughes
Journal:  BMC Bioinformatics       Date:  2011-05-20       Impact factor: 3.307

4.  Biodiversity conservation gaps in the Brazilian protected areas.

Authors:  Ubirajara Oliveira; Britaldo Silveira Soares-Filho; Adriano Pereira Paglia; Antonio D Brescovit; Claudio J B de Carvalho; Daniel Paiva Silva; Daniella T Rezende; Felipe Sá Fortes Leite; João Aguiar Nogueira Batista; João Paulo Peixoto Pena Barbosa; João Renato Stehmann; John S Ascher; Marcelo Ferreira de Vasconcelos; Paulo De Marco; Peter Löwenberg-Neto; Viviane Gianluppi Ferro; Adalberto J Santos
Journal:  Sci Rep       Date:  2017-08-22       Impact factor: 4.379

5.  Modelling Highly Biodiverse Areas in Brazil.

Authors:  Ubirajara Oliveira; Britaldo Silveira Soares-Filho; Adalberto J Santos; Adriano Pereira Paglia; Antonio D Brescovit; Claudio J B de Carvalho; Daniel Paiva Silva; Daniella T Rezende; Felipe Sá Fortes Leite; João Aguiar Nogueira Batista; João Paulo Peixoto Pena Barbosa; João Renato Stehmann; John S Ascher; Marcelo F Vasconcelos; Paulo De Marco; Peter Löwenberg-Neto; Viviane Gianluppi Ferro
Journal:  Sci Rep       Date:  2019-04-23       Impact factor: 4.379

6.  Sharing and re-use of phylogenetic trees (and associated data) to facilitate synthesis.

Authors:  Arlin Stoltzfus; Brian O'Meara; Jamie Whitacre; Ross Mounce; Emily L Gillespie; Sudhir Kumar; Dan F Rosauer; Rutger A Vos
Journal:  BMC Res Notes       Date:  2012-10-22
  6 in total

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