Literature DB >> 17893084

Idiographica: a general-purpose web application to build idiograms on-demand for human, mouse and rat.

Taishin Kin1, Yukiteru Ono.   

Abstract

SUMMARY: We have launched a web server, which serves as a general-purpose idiogram rendering service, and allows users to generate high-quality idiograms with custom annotation according to their own genome-wide mapping/annotation data through an easy-to-use interface. The generated idiograms are suitable not only for visualizing summaries of genome-wide analysis but also for many types of presentation material including web pages, conference posters, oral presentations, etc. AVAILABILITY: Idiographica is freely available at http://www.ncrna.org/idiographica/

Entities:  

Mesh：

Year:  2007        PMID： 17893084     DOI： 10.1093/bioinformatics/btm455

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  41 in total

Review 1.  An overview of the neurobiology of suicidal behaviors as one meta-system.

Authors:  M Sokolowski; J Wasserman; D Wasserman
Journal:  Mol Psychiatry       Date:  2014-09-02       Impact factor: 15.992

2.  Multiple metabolic genetic risk scores and type 2 diabetes risk in three racial/ethnic groups.

Authors:  Yann C Klimentidis; Nathan E Wineinger; Ana I Vazquez; Gustavo de Los Campos
Journal:  J Clin Endocrinol Metab       Date:  2014-06-06       Impact factor: 5.958

3.  Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta.

Authors:  Tauno Metsalu; Triin Viltrop; Airi Tiirats; Balaji Rajashekar; Ene Reimann; Sulev Kõks; Kristiina Rull; Lili Milani; Ganesh Acharya; Purusotam Basnet; Jaak Vilo; Reedik Mägi; Andres Metspalu; Maire Peters; Kadri Haller-Kikkatalo; Andres Salumets
Journal:  Epigenetics       Date:  2014-10       Impact factor: 4.528

4.  Nuclear architecture dictates HIV-1 integration site selection.

Authors:  Bruna Marini; Attila Kertesz-Farkas; Hashim Ali; Bojana Lucic; Kamil Lisek; Lara Manganaro; Sandor Pongor; Roberto Luzzati; Alessandra Recchia; Fulvio Mavilio; Mauro Giacca; Marina Lusic
Journal:  Nature       Date:  2015-03-02       Impact factor: 49.962

5.  Differential DNA methylation profiles of coding and non-coding genes define hippocampal sclerosis in human temporal lobe epilepsy.

Authors:  Suzanne F C Miller-Delaney; Kenneth Bryan; Sudipto Das; Ross C McKiernan; Isabella M Bray; James P Reynolds; Ryder Gwinn; Raymond L Stallings; David C Henshall
Journal:  Brain       Date:  2014-12-30       Impact factor: 13.501

6.  A vertically stacked, polymer, microfluidic point mutation analyzer: rapid high accuracy detection of low-abundance K-ras mutations.

Authors:  Kyudong Han; Tae Yoon Lee; Dimitris E Nikitopoulos; Steven A Soper; Michael C Murphy
Journal:  Anal Biochem       Date:  2011-06-30       Impact factor: 3.365

7.  In silico mapping of quantitative trait loci (QTL) regulating the milk ionome in mice identifies a milk iron locus on chromosome 1.

Authors:  Darryl L Hadsell; Louise A Hadsell; Monique Rijnkels; Yareli Carcamo-Bahena; Jerry Wei; Peter Williamson; Michael A Grusak
Journal:  Mamm Genome       Date:  2018-08-02       Impact factor: 2.957

8.  Exploring genome-wide DNA methylation profiles altered in hepatocellular carcinoma using Infinium HumanMethylation 450 BeadChips.

Authors:  Jing Shen; Shuang Wang; Yu-Jing Zhang; Hui-Chen Wu; Muhammad G Kibriya; Farzana Jasmine; Habibul Ahsan; David P H Wu; Abby B Siegel; Helen Remotti; Regina M Santella
Journal:  Epigenetics       Date:  2012-12-03       Impact factor: 4.528

9.  FancyGene: dynamic visualization of gene structures and protein domain architectures on genomic loci.

Authors:  Davide Rambaldi; Francesca D Ciccarelli
Journal:  Bioinformatics       Date:  2009-06-19       Impact factor: 6.937

10.  Chromosomal inversions between human and chimpanzee lineages caused by retrotransposons.

Authors:  Jungnam Lee; Kyudong Han; Thomas J Meyer; Heui-Soo Kim; Mark A Batzer
Journal:  PLoS One       Date:  2008-12-29       Impact factor: 3.240
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