Literature DB >> 17892534

A bioinformatics approach to identifying tail-anchored proteins in the human genome.

Ted Kalbfleisch1, Alex Cambon, Binks W Wattenberg.   

Abstract

Intracellular proteins with a carboxy-terminal transmembrane domain and the amino-terminus oriented toward the cytosol are known as 'tail-anchored' proteins. Tail-anchored proteins have been of considerable interest because several important classes of proteins, including the vesicle-targeting/fusion proteins known as SNAREs and the apoptosis-related proteins of the Bcl-2 family, among others, utilize this unique membrane-anchoring motif. Here, we use a bioinformatic technique to develop a comprehensive list of potentially tail-anchored proteins in the human genome. Our final list contains 411 entries derived from 325 unique genes. We also analyzed both known and predicted tail-anchored proteins with respect to the amino acid composition of the transmembrane segments. This analysis revealed a distinctive composition of the membrane anchor in SNARE proteins.

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Year:  2007        PMID: 17892534     DOI: 10.1111/j.1600-0854.2007.00661.x

Source DB:  PubMed          Journal:  Traffic        ISSN: 1398-9219            Impact factor:   6.215


  58 in total

1.  Tail-anchor targeting by a Get3 tetramer: the structure of an archaeal homologue.

Authors:  Christian J M Suloway; Michael E Rome; William M Clemons
Journal:  EMBO J       Date:  2011-11-29       Impact factor: 11.598

2.  Nucleotide-dependent mechanism of Get3 as elucidated from free energy calculations.

Authors:  Jeff Wereszczynski; J Andrew McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-30       Impact factor: 11.205

3.  Preliminary X-ray crystallographic studies of yeast Get3.

Authors:  Junbin Hu; Jingzhi Li; Xinguo Qian; Zhongmin Jin; Zhengqing Fu; Bingdong Sha
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2009-04-24

4.  A precursor-specific role for Hsp40/Hsc70 during tail-anchored protein integration at the endoplasmic reticulum.

Authors:  Catherine Rabu; Peter Wipf; Jeffrey L Brodsky; Stephen High
Journal:  J Biol Chem       Date:  2008-07-29       Impact factor: 5.157

Review 5.  Comparison between the behavior of different hydrophobic peptides allowing membrane anchoring of proteins.

Authors:  Mustapha Lhor; Sarah C Bernier; Habib Horchani; Sylvain Bussières; Line Cantin; Bernard Desbat; Christian Salesse
Journal:  Adv Colloid Interface Sci       Date:  2014-01-28       Impact factor: 12.984

6.  Differential gradients of interaction affinities drive efficient targeting and recycling in the GET pathway.

Authors:  Michael E Rome; Un Seng Chio; Meera Rao; Harry Gristick; Shu-ou Shan
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

Review 7.  The Ways of Tails: the GET Pathway and more.

Authors:  Nica Borgese; Javier Coy-Vergara; Sara Francesca Colombo; Blanche Schwappach
Journal:  Protein J       Date:  2019-06       Impact factor: 2.371

8.  Substrate relay in an Hsp70-cochaperone cascade safeguards tail-anchored membrane protein targeting.

Authors:  Hyunju Cho; Shu-Ou Shan
Journal:  EMBO J       Date:  2018-07-04       Impact factor: 11.598

9.  Different proteolipid protein mutants exhibit unique metabolic defects.

Authors:  Maik Hüttemann; Zhan Zhang; Chadwick Mullins; Denise Bessert; Icksoo Lee; Klaus-Armin Nave; Sunita Appikatla; Robert P Skoff
Journal:  ASN Neuro       Date:  2009-08-25       Impact factor: 4.146

10.  The crystal structures of yeast Get3 suggest a mechanism for tail-anchored protein membrane insertion.

Authors:  Junbin Hu; Jingzhi Li; Xinguo Qian; Vlad Denic; Bingdong Sha
Journal:  PLoS One       Date:  2009-11-30       Impact factor: 3.240

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