Literature DB >> 17890902

The ribosome filter redux.

Vincent P Mauro1, Gerald M Edelman.   

Abstract

The ribosome filter hypothesis postulates that ribosomes are not simply translation machines but also function as regulatory elements that differentially affect or filter the translation of particular mRNAs. On the basis of new information, we take the opportunity here to review the ribosome filter hypothesis, suggest specific mechanisms of action, and discuss recent examples from the literature that support it.

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Year:  2007        PMID： 17890902      PMCID： PMC2930609          DOI： 10.4161/cc.6.18.4739

Source DB:  PubMed          Journal:  Cell Cycle        ISSN： 1551-4005            Impact factor:   4.534


  62 in total

1.  A 9-nt segment of a cellular mRNA can function as an internal ribosome entry site (IRES) and when present in linked multiple copies greatly enhances IRES activity.

Authors:  S A Chappell; G M Edelman; V P Mauro
Journal:  Proc Natl Acad Sci U S A       Date:  2000-02-15       Impact factor: 11.205

2.  Identification of two short internal ribosome entry sites selected from libraries of random oligonucleotides.

Authors:  G C Owens; S A Chappell; V P Mauro; G M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-13       Impact factor: 11.205

3.  Synthesis of ribosomal proteins in developing Dictyostelium discoideum cells is controlled by the methylation of proteins S24 and S31.

Authors:  Giorgio Mangiarotti
Journal:  Biochem Cell Biol       Date:  2002       Impact factor: 3.626

4.  ELAV/Hu proteins inhibit p27 translation via an IRES element in the p27 5'UTR.

Authors:  Michael Kullmann; Ulrich Göpfert; Basile Siewe; Ludger Hengst
Journal:  Genes Dev       Date:  2002-12-01       Impact factor: 11.361

5.  Ribosomal proteins mediate the hepatitis C virus IRES-HeLa 40S interaction.

Authors:  Geoff A Otto; Peter J Lukavsky; Alissa M Lancaster; Peter Sarnow; Joseph D Puglisi
Journal:  RNA       Date:  2002-07       Impact factor: 4.942

Review 6.  The ribosome filter hypothesis.

Authors:  Vincent P Mauro; Gerald M Edelman
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-09       Impact factor: 11.205

7.  Translational control of the Xenopus laevis connexin-41 5'-untranslated region by three upstream open reading frames.

Authors:  H A Meijer; W J Dictus; E D Keuning; A A Thomas
Journal:  J Biol Chem       Date:  2000-10-06       Impact factor: 5.157

8.  Functional characterization of the X-linked inhibitor of apoptosis (XIAP) internal ribosome entry site element: role of La autoantigen in XIAP translation.

Authors:  M Holcik; R G Korneluk
Journal:  Mol Cell Biol       Date:  2000-07       Impact factor: 4.272

9.  Human interferon-gamma mRNA autoregulates its translation through a pseudoknot that activates the interferon-inducible protein kinase PKR.

Authors:  Yitzhak Ben-Asouli; Yona Banai; Yehuda Pel-Or; Alexei Shir; Raymond Kaempfer
Journal:  Cell       Date:  2002-01-25       Impact factor: 41.582

10.  Nerve growth factor selectively regulates expression of transcripts encoding ribosomal proteins.

Authors:  James M Angelastro; Béata Töröcsik; Lloyd A Greene
Journal:  BMC Neurosci       Date:  2002-02-28       Impact factor: 3.288
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  53 in total

1.  Alternative ferritin mRNA translation via internal initiation.

Authors:  Alina Daba; Antonis E Koromilas; Kostas Pantopoulos
Journal:  RNA       Date:  2012-01-23       Impact factor: 4.942

Review 2.  mRNA translation: regulating an out of soma experience.

Authors:  David G Wells
Journal:  Curr Opin Cell Biol       Date:  2012-07-06       Impact factor: 8.382

Review 3.  Long non-coding RNAs in corticogenesis: deciphering the non-coding code of the brain.

Authors:  Julieta Aprea; Federico Calegari
Journal:  EMBO J       Date:  2015-10-29       Impact factor: 11.598

4.  Translational cross talk in gene networks.

Authors:  William H Mather; Jeff Hasty; Lev S Tsimring; Ruth J Williams
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

5.  Identification of Changing Ribosome Protein Compositions using Mass Spectrometry.

Authors:  Parimal Samir; Christopher M Browne; Ming Sun; Bingxin Shen; Wen Li; Joachim Frank; Andrew J Link
Journal:  Proteomics       Date:  2018-10       Impact factor: 3.984

Review 6.  A critical analysis of codon optimization in human therapeutics.

Authors:  Vincent P Mauro; Stephen A Chappell
Journal:  Trends Mol Med       Date:  2014-09-25       Impact factor: 11.951

Review 7.  Codon-biased translation can be regulated by wobble-base tRNA modification systems during cellular stress responses.

Authors:  Lauren Endres; Peter C Dedon; Thomas J Begley
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

8.  Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA.

Authors:  Pamela A Barendt; Najaf A Shah; Gregory A Barendt; Parth A Kothari; Casim A Sarkar
Journal:  ACS Chem Biol       Date:  2013-03-07       Impact factor: 5.100

9.  Facilitated leaky scanning and atypical ribosome shunting direct downstream translation initiation on the tricistronic S1 mRNA of avian reovirus.

Authors:  Trina Racine; Roy Duncan
Journal:  Nucleic Acids Res       Date:  2010-07-07       Impact factor: 16.971

10.  Role and dynamics of the ribosomal protein P0 and its related trans-acting factor Mrt4 during ribosome assembly in Saccharomyces cerevisiae.

Authors:  María Rodríguez-Mateos; Juan J García-Gómez; Rosario Francisco-Velilla; Miguel Remacha; Jesús de la Cruz; Juan P G Ballesta
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971
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