Literature DB >> 17890335

Identification of opdA, a gene involved in biodegradation of the endocrine disrupter octylphenol.

A W Porter1, A G Hay.   

Abstract

Octylphenol (OP) is an estrogenic detergent breakdown product. Structurally similar nonylphenols are transformed via type II ispo substitution, resulting in the production of hydroquinone and removal of the branched side chain. Nothing is known, however, about the gene(s) encoding this activity. We report here on our efforts to clone the gene(s) encoding OP degradation activity from Sphingomonas sp. strain PWE1, which we isolated for its ability to grow on OP. A fosmid library of PWE1 DNA yielded a single clone, aew4H12, which accumulated a brown polymerization product in the presence of OP. Sequence analysis of loss-of-function transposon mutants of aew4H12 revealed a single open reading frame, opdA, that conferred OP degradation activity. Escherichia coli subclones expressing opdA caused OP disappearance, with the concomitant production of hydroquinone and 2,4,4-trimethyl-1-pentene as well as small amounts of 2,4,4-trimethyl-2-pentanol. These metabolites are consistent with a type II ipso substitution reaction, the same mechanism described for nonylphenol biodegradation in other sphingomonads. Based on opdA's sequence homology to a unique group of putative flavin monooxygenases and the recovery of hydroxylated OP intermediates from E. coli expressing opdA, we conclude that this gene encodes the observed type II ipso substitution activity responsible for the initial step in OP biodegradation.

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Year:  2007        PMID: 17890335      PMCID: PMC2168194          DOI: 10.1128/AEM.01478-07

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  32 in total

1.  Aerobic biodegradation of nonylphenol by cold-adapted bacteria.

Authors:  Ana Soares; Benoit Guieysse; Osvaldo Delgado; Bo Mattiasson
Journal:  Biotechnol Lett       Date:  2003-05       Impact factor: 2.461

2.  Biodegradation of 4-chlorophenol via a hydroquinone pathway by Arthrobacter ureafaciens CPR706.

Authors:  H S Bae; J M Lee; S T Lee
Journal:  FEMS Microbiol Lett       Date:  1996-11-15       Impact factor: 2.742

3.  Pathway for Biodegradation of p-Nitrophenol in a Moraxella sp.

Authors:  J C Spain; D T Gibson
Journal:  Appl Environ Microbiol       Date:  1991-03       Impact factor: 4.792

4.  Construction of a Novel Polychlorinated Biphenyl-Degrading Bacterium: Utilization of 3,4'-Dichlorobiphenyl by Pseudomonas acidovorans M3GY.

Authors:  M V McCullar; V Brenner; R H Adams; D D Focht
Journal:  Appl Environ Microbiol       Date:  1994-10       Impact factor: 4.792

5.  Differential degradation of nonylphenol isomers by Sphingomonas xenophaga Bayram.

Authors:  Frédéric L P Gabriel; Walter Giger; Klaus Guenther; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2005-03       Impact factor: 4.792

6.  4-Ethylphenol metabolism by Aspergillus fumigatus.

Authors:  K H Jones; P W Trudgill; D J Hopper
Journal:  Appl Environ Microbiol       Date:  1994-06       Impact factor: 4.792

7.  Sphingobium amiense sp. nov., a novel nonylphenol-degrading bacterium isolated from a river sediment.

Authors:  Yuuji Ushiba; Yoshiharu Takahara; Hiroyuki Ohta
Journal:  Int J Syst Evol Microbiol       Date:  2003-11       Impact factor: 2.747

8.  Pathway for ubiquinone biosynthesis in Escherichia coli K-12: gene-enzyme relationships and intermediates.

Authors:  I G Young; P Stroobant; C G Macdonald; F Gibson
Journal:  J Bacteriol       Date:  1973-04       Impact factor: 3.490

9.  Elucidation of the ipso-substitution mechanism for side-chain cleavage of alpha-quaternary 4-nonylphenols and 4-t-butoxyphenol in Sphingobium xenophagum Bayram.

Authors:  Frédéric L P Gabriel; Maike Cyris; Niels Jonkers; Walter Giger; Klaus Guenther; Hans-Peter E Kohler
Journal:  Appl Environ Microbiol       Date:  2007-03-16       Impact factor: 4.792

10.  Isolation of a bacterial strain able to degrade branched nonylphenol.

Authors:  T Tanghe; W Dhooge; W Verstraete
Journal:  Appl Environ Microbiol       Date:  1999-02       Impact factor: 4.792

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  10 in total

Review 1.  Impact of microbes on autoimmune diseases.

Authors:  Claudia Danzer; Jochen Mattner
Journal:  Arch Immunol Ther Exp (Warsz)       Date:  2013-02-16       Impact factor: 4.291

2.  Isolation and characterization of marine nonylphenol-degrading bacteria and description of Pseudomaricurvus alkylphenolicus gen. nov., sp. nov.

Authors:  Hiroaki Iwaki; Makoto Fujioka; Yoshie Hasegawa
Journal:  Curr Microbiol       Date:  2013-09-20       Impact factor: 2.188

3.  Ipso-hydroxylation and subsequent fragmentation: a novel microbial strategy to eliminate sulfonamide antibiotics.

Authors:  Benjamin Ricken; Philippe F X Corvini; Danuta Cichocka; Martina Parisi; Markus Lenz; Dominik Wyss; Paula M Martínez-Lavanchy; Jochen A Müller; Patrick Shahgaldian; Ludovico G Tulli; Hans-Peter E Kohler; Boris A Kolvenbach
Journal:  Appl Environ Microbiol       Date:  2013-07-08       Impact factor: 4.792

4.  Variation of nonylphenol-degrading gene abundance and bacterial community structure in bioaugmented sediment microcosm.

Authors:  Zhao Wang; Yuyin Yang; Weimin Sun; Yu Dai; Shuguang Xie
Journal:  Environ Sci Pollut Res Int       Date:  2014-10-03       Impact factor: 4.223

5.  Isolation and characterization of 4-tert-butylphenol-utilizing Sphingobium fuliginis strains from Phragmites australis rhizosphere sediment.

Authors:  Tadashi Toyama; Naonori Momotani; Yuka Ogata; Yuji Miyamori; Daisuke Inoue; Kazunari Sei; Kazuhiro Mori; Shintaro Kikuchi; Michihiko Ike
Journal:  Appl Environ Microbiol       Date:  2010-08-27       Impact factor: 4.792

6.  Draft Genome Sequence of Pseudomonas nitroreducens Strain TX1, Which Degrades Nonionic Surfactants and Estrogen-Like Alkylphenols.

Authors:  Shir-Ly Huang; Hsin Chen; Anyi Hu; Nguyen Ngoc Tuan; Chang-Ping Yu
Journal:  Genome Announc       Date:  2014-01-30

7.  Comparative Analysis of the Genetic Basis of Branched Nonylphenol Degradation by Sphingobium amiense DSM 16289T and Sphingobium cloacae JCM 10874T.

Authors:  Mina Ootsuka; Tomoyasu Nishizawa; Morifumi Hasegawa; Yasurou Kurusu; Hiroyuki Ohta
Journal:  Microbes Environ       Date:  2018-12-05       Impact factor: 2.912

8.  Complete Genome Sequence of the Nonylphenol-Degrading Bacterium Sphingobium cloacae JCM 10874T.

Authors:  Mina Ootsuka; Tomoyasu Nishizawa; Hiroyuki Ohta
Journal:  Genome Announc       Date:  2016-12-08

9.  Degradation Potential of the Nonylphenol Monooxygenase of Sphingomonas sp. NP5 for Bisphenols and Their Structural Analogs.

Authors:  Masahiro Takeo; Junichi Akizuki; Aika Kawasaki; Seiji Negoro
Journal:  Microorganisms       Date:  2020-02-19

Review 10.  Microbial transformation of widely used pharmaceutical and personal care product compounds.

Authors:  Abigail W Porter; Sarah J Wolfson; Max Häggblom; Lily Y Young
Journal:  F1000Res       Date:  2020-02-21
  10 in total

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