Literature DB >> 17890078

The expanding diversity of serine hydrolases.

Istvan Botos1, Alexander Wlodawer.   

Abstract

Serine hydrolases use a hydroxyl of a serine, assisted by one or more other residues, to cleave peptide bonds. They belong to several different families whose general mechanism is well known. However, the subtle structural differences that have recently been observed across a variety of families shed light on their functional diversity, including variations in mechanism of action, differences in the modes of substrate binding, and substrate-assisted orientation of catalytic residues. Of particular interest are the Rhomboid family serine proteinases that are active within the plasma membrane, for which several new structures have been reported. Because these enzymes are involved in biological and pathological processes, many are becoming important targets of drug design.

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Year:  2007        PMID: 17890078      PMCID: PMC2173878          DOI: 10.1016/j.sbi.2007.08.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  33 in total

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Journal:  FEBS J       Date:  2005-02       Impact factor: 5.542

2.  Crystal structure of earthworm fibrinolytic enzyme component B: a novel, glycosylated two-chained trypsin.

Authors:  Feng Wang; Chao Wang; Mei Li; Ji-Ping Zhang; Lu-Lu Gui; Xiao-Min An; Wen-Rui Chang
Journal:  J Mol Biol       Date:  2005-05-06       Impact factor: 5.469

3.  Evolution of prokaryotic subtilases: genome-wide analysis reveals novel subfamilies with different catalytic residues.

Authors:  Roland J Siezen; Bernadet Renckens; Jos Boekhorst
Journal:  Proteins       Date:  2007-05-15

4.  Crystal structure of hemoglobin protease, a heme binding autotransporter protein from pathogenic Escherichia coli.

Authors:  Ben R Otto; Robert Sijbrandi; Joen Luirink; Bauke Oudega; Jonathan G Heddle; Kenji Mizutani; Sam-Yong Park; Jeremy R H Tame
Journal:  J Biol Chem       Date:  2005-02-22       Impact factor: 5.157

5.  Atomic-resolution crystal structure of the proteolytic domain of Archaeoglobus fulgidus lon reveals the conformational variability in the active sites of lon proteases.

Authors:  Istvan Botos; Edward E Melnikov; Scott Cherry; Serguei Kozlov; Oksana V Makhovskaya; Joseph E Tropea; Alla Gustchina; Tatyana V Rotanova; Alexander Wlodawer
Journal:  J Mol Biol       Date:  2005-08-05       Impact factor: 5.469

6.  1.70 A X-ray structure of human apo kallikrein 1: structural changes upon peptide inhibitor/substrate binding.

Authors:  Gurunathan Laxmikanthan; Sachiko I Blaber; Matthew J Bernett; Isobel A Scarisbrick; Maria Aparecida Juliano; Michael Blaber
Journal:  Proteins       Date:  2005-03-01

7.  Structural and kinetic analysis of the substrate specificity of human fibroblast activation protein alpha.

Authors:  Kathleen Aertgeerts; Irena Levin; Lihong Shi; Gyorgy P Snell; Andy Jennings; G Sridhar Prasad; Yanming Zhang; Michelle L Kraus; Shant Salakian; Vandana Sridhar; Robert Wijnands; Mike G Tennant
Journal:  J Biol Chem       Date:  2005-04-04       Impact factor: 5.157

8.  Structural and mechanistic analysis of two prolyl endopeptidases: role of interdomain dynamics in catalysis and specificity.

Authors:  Lu Shan; Irimpan I Mathews; Chaitan Khosla
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

9.  Crystal structures and amidolytic activities of two glycosylated snake venom serine proteinases.

Authors:  Zhongliang Zhu; Zhi Liang; Tianyi Zhang; Zhiqiang Zhu; Weihua Xu; Maikun Teng; Liwen Niu
Journal:  J Biol Chem       Date:  2005-01-04       Impact factor: 5.157

10.  The structure of a universally employed enzyme: V8 protease from Staphylococcus aureus.

Authors:  Lata Prasad; Yvonne Leduc; Koto Hayakawa; Louis T J Delbaere
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-01-23
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  13 in total

1.  Crystal structure of a viral protease intramolecular acyl-enzyme complex: insights into cis-cleavage at the VP4/VP3 junction of Tellina birnavirus.

Authors:  Ivy Yeuk Wah Chung; Mark Paetzel
Journal:  J Biol Chem       Date:  2011-02-02       Impact factor: 5.157

2.  Crystal Structure and Substrate Specificity Modification of Acetyl Xylan Esterase from Aspergillus luchuensis.

Authors:  Dai Komiya; Akane Hori; Takuya Ishida; Kiyohiko Igarashi; Masahiro Samejima; Takuya Koseki; Shinya Fushinobu
Journal:  Appl Environ Microbiol       Date:  2017-09-29       Impact factor: 4.792

Review 3.  Resurrection and Reactivation of Acetylcholinesterase and Butyrylcholinesterase.

Authors:  Andrew J Franjesevic; Sydney B Sillart; Jeremy M Beck; Shubham Vyas; Christopher S Callam; Christopher M Hadad
Journal:  Chemistry       Date:  2019-02-13       Impact factor: 5.236

4.  Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction.

Authors:  Katarzyna Prymula; Tomasz Jadczyk; Irena Roterman
Journal:  J Comput Aided Mol Des       Date:  2010-11-21       Impact factor: 3.686

5.  Structure of BbKI, a disulfide-free plasma kallikrein inhibitor.

Authors:  Dongwen Zhou; Daiane Hansen; Ivan G Shabalin; Alla Gustchina; Debora F Vieira; Marlon V de Brito; Ana Paula U Araújo; Maria Luiza V Oliva; Alexander Wlodawer
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-07-29       Impact factor: 1.056

6.  Structural Basis and Binding Kinetics of Vaborbactam in Class A β-Lactamase Inhibition.

Authors:  Orville A Pemberton; Ruslan Tsivkovski; Maxim Totrov; Olga Lomovskaya; Yu Chen
Journal:  Antimicrob Agents Chemother       Date:  2020-09-21       Impact factor: 5.191

7.  Cyanuric acid hydrolase: evolutionary innovation by structural concatenation.

Authors:  Thomas S Peat; Sahil Balotra; Matthew Wilding; Nigel G French; Lyndall J Briggs; Santosh Panjikar; Nathan Cowieson; Janet Newman; Colin Scott
Journal:  Mol Microbiol       Date:  2013-05-20       Impact factor: 3.501

8.  Structural studies of complexes of kallikrein 4 with wild-type and mutated forms of the Kunitz-type inhibitor BbKI.

Authors:  Mi Li; Jaroslav Srp; Michael Mareš; Alexander Wlodawer; Alla Gustchina
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-07-29       Impact factor: 5.699

9.  S46 peptidases are the first exopeptidases to be members of clan PA.

Authors:  Yasumitsu Sakamoto; Yoshiyuki Suzuki; Ippei Iizuka; Chika Tateoka; Saori Roppongi; Mayu Fujimoto; Koji Inaka; Hiroaki Tanaka; Mika Masaki; Kazunori Ohta; Hirofumi Okada; Takamasa Nonaka; Yasushi Morikawa; Kazuo T Nakamura; Wataru Ogasawara; Nobutada Tanaka
Journal:  Sci Rep       Date:  2014-05-15       Impact factor: 4.379

10.  Design of activated serine-containing catalytic triads with atomic-level accuracy.

Authors:  Sridharan Rajagopalan; Chu Wang; Kai Yu; Alexandre P Kuzin; Florian Richter; Scott Lew; Aleksandr E Miklos; Megan L Matthews; Jayaraman Seetharaman; Min Su; John F Hunt; Benjamin F Cravatt; David Baker
Journal:  Nat Chem Biol       Date:  2014-04-06       Impact factor: 15.040

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