Literature DB >> 17887830

Computing stationary distributions in equilibrium and nonequilibrium systems with forward flux sampling.

Chantal Valeriani1, Rosalind J Allen, Marco J Morelli, Daan Frenkel, Pieter Rein ten Wolde.   

Abstract

We present a method for computing stationary distributions for activated processes in equilibrium and nonequilibrium systems using forward flux sampling. In this method, the stationary distributions are obtained directly from the rate constant calculations for the forward and backward reactions; there is no need to perform separate calculations for the stationary distribution and the rate constant. We apply the method to the nonequilibrium rare event problem proposed by Maier and Stein, to nucleation in a 2-dimensional Ising system, and to the flipping of a genetic switch.

Mesh:

Year:  2007        PMID: 17887830     DOI: 10.1063/1.2767625

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  16 in total

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10.  Automatic error control during forward flux sampling of rare events in master equation models.

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Journal:  J Chem Phys       Date:  2020-01-21       Impact factor: 3.488

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