Literature DB >> 17887790

Carbohydrate clustering in aqueous solutions and the dynamics of confined water.

Milton T Sonoda1, Munir S Skaf.   

Abstract

We use molecular dynamics simulations to investigate structure and dynamics of fructose aqueous solutions in the 1-5 M concentration range at ambient conditions. We analyze hydration structures, H-bond statistics, and size distribution of H-bonded carbohydrate clusters as functions of concentration. We find that the local tetrahedral order of water is reasonably well-preserved and that the solute tends to appear as scattered "isolated" molecules at low concentrations and as H-bonded clusters for less diluted solutions. The sugar cluster size distribution exhibits a sharp transition to a percolated cluster between 3.5 and 3.8 M. The percolated cluster forms an intertwined network of H-bonded saccharides that imprisons water. For the dynamics, we find good agreement between simulation and available experimental results for the self-diffusion coefficients. Water librational dynamics is little affected by sugar concentration, whereas reorientational relaxation is described by a concentration-independent bulk-like component attributed to noninterfacial water molecules and a slower component (strongly concentration dependent) that arises from interfacial solvent molecules and, hence, depends on the dynamics of the cluster structure itself. Analysis of H-bonding survival probability functions indicates that the formation of carbohydrate clusters upon increasing concentration enhances the H-bond relaxation time and slows down the entire system dynamics. We find that multiexponential or stretched-exponential fits alone cannot describe the H-bond survival probabilities for the entire postlibrational time span of our data (0.1-100 ps), as opposed to a combined stretched-plus-biexponential function, which provides excellent fits. Our results suggest that water dynamics in concentrated fructose solutions resembles in many ways that of protein hydration water.

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Year:  2007        PMID: 17887790     DOI: 10.1021/jp0749120

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  5 in total

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2.  Ion mobility mass spectrometry analysis of isomeric disaccharide precursor, product and cluster ions.

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4.  Relationships between Molecular Structure of Carbohydrates and Their Dynamic Hydration Shells Revealed by Terahertz Time-Domain Spectroscopy.

Authors:  Nikita V Penkov
Journal:  Int J Mol Sci       Date:  2021-11-04       Impact factor: 5.923

5.  A small bioactive glycoside inhibits epsilon toxin and prevents cell death.

Authors:  Abhishek Shivappagowdar; Soumya Pati; Chintam Narayana; Rajagopal Ayana; Himani Kaushik; Raj Sah; Swati Garg; Ashish Khanna; Jyoti Kumari; Lalit Garg; Ram Sagar; Shailja Singh
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  5 in total

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